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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaacattcattcaagcagacttgttttcattagatatatctctcattggggctaaaagtaaggttgtggtgtgtttgcagTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGATTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGAT

Basic information

species Arabidopsis thaliana
transcript AT2G01170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g42234.2 (Oryza sativa), 3'ss of exon 3
gtgcaacattcattcaagcagacttgttttcattagatatatctctcattggggctaaaagtaaggttgtggtgtgtttgcagTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGATTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGAT
        |  |   || || ||      |  |  ||  | ||  |  ||      | |  | |  ||        |||||||||||| |||||| ||||||| |||||||| ||||| ||| |||||||||||||| |||| |||  ||| || || |  ||||| || || || |  |  |
-------gtaaaccgaaccaaaccatcccttctctgaactttcagttcttatctgaatatctgaactttcttctgctttgcagTGGGCGGTGACGACCAGCGTGGACTTCTCACTGGCCCAGCTGATTCAGGTGATCATCCTGCTCAGCACTGGGGGCAACAACGGAGGAGGGTACATGGCGT

upper sequence: AT2G01170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G309163_T01 (Zea mays), 3'ss of exon 3
gtgcaacattcattcaagcagacttgttttcattagatatatctctcattggggctaaaagtaaggttgtggtgtgtttgcagTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGATTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGAT
              ||||||||       |     ||    ||  |||||    |    | |||  |       | | ||||||||||||  || |||||| | |||||||| ||||||||| |||| ||||||||||||||||||  ||| || || |  || |||||||| ||    | ||
-------------gcaagcagagcgtccctttcctgaagc-tccttcattccctccccta-taaaatca----atctctgcagTGGGCAGGCACCGCCAGCATCGACTTCTCCCTGGCACAGCTGATCCAGGTGATCGTCCTTCTCAGCACGGGGGGCAACAATGGCGGCGGGTACCTGGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattagatatatctctcattggggctaaaagtaaggttgtggtgtgtttgcagTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGATTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGAT
                        ggctaaa  putative branch site (score: 3)
     tagatatat  TA-rich tract