Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttttaattccttggctcctttgtttttccatggcttaaaatctaatttgtttgtcctaataactcttgtatatatattgtaacatgtgagtttgcttcttctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125281436|gb|EL295521.1|EL295521
EST:     TTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG                         GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCC
genomic: -TTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCC
EST: gi|116458585|gb|EG501177.1|EG501177
EST:     GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG                         GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
genomic: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
EST: gi|116458586|gb|EG501178.1|EG501178
EST:     GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG                         GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
genomic: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaataactcttgtatatatattgtaacatgtgagtttgcttcttctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG
                                    tttgcttcttctatt  CT-rich tract
           ttgtatatatattgta  TA-rich tract