1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtaattgaaaaggatagactatattgtatatgataagcaaacctctctcgactcttgtctgagtgttatgttttctgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG
species | Arabidopsis thaliana |
transcript | AT1G80230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGEST: gi|86037662|gb|DR333417.1|DR333417
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAG
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037651|gb|DR333406.1|DR333406
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037663|gb|DR333418.1|DR333418
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037669|gb|DR333424.1|DR333424
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037675|gb|DR333430.1|DR333430
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037647|gb|DR333402.1|DR333402
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037644|gb|DR333399.1|DR333399
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCSTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGEST: gi|86037659|gb|DR333414.1|DR333414
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037674|gb|DR333429.1|DR333429
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037656|gb|DR333411.1|DR333411
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037665|gb|DR333420.1|DR333420
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037646|gb|DR333401.1|DR333401
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037648|gb|DR333403.1|DR333403
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037661|gb|DR333416.1|DR333416
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037654|gb|DR333409.1|DR333409
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037660|gb|DR333415.1|DR333415
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037664|gb|DR333419.1|DR333419
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037670|gb|DR333425.1|DR333425
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037672|gb|DR333427.1|DR333427
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037655|gb|DR333410.1|DR333410
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|86037657|gb|DR333412.1|DR333412
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAA-G GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTEST: gi|86037645|gb|DR333400.1|DR333400
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGT
EST: GGAGGAAGCTGGACGATATAGACTTTCCTAAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCEST: gi|164089899|gb|ES029767.1|ES029767
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGEST: gi|86037671|gb|DR333426.1|DR333426
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAAEST: gi|86037666|gb|DR333421.1|DR333421
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAA
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGEST: gi|125140196|gb|EL178566.1|EL178566
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTEST: gi|86037676|gb|DR333431.1|DR333431
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTT
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTTGEST: gi|125119219|gb|EL167549.1|EL167549
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTT-G
EST: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTG
tgataagcaaacctctctcgactcttgtctgagtgttatgttttctgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG
ttctgat putative branch site (score: 3)
tgttttct CT-rich tract
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtaattgaaaaggatagactatattgtatatgataagcaaacctctctcgactcttgtctgagtgttatgttttctgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG