1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatcccattgcttgctgttgaacttgaatgcaccgctgacttatatcaactaattctacttgcttatttaccttcttttgtgttacagGCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGCTGTCGATTCAATACCATC
species | Arabidopsis thaliana |
transcript | AT1G79940.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG GCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAEST: gi|124996751|gb|EL069020.1|EL069020
genomic: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAGgtaatcccat ... tgtgttacagGCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACA
EST: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG GCTCAAGTTTTTGACCCATTCAGTATACEST: gi|116473043|gb|EG515635.1|EG515635
genomic: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAGgtaatcccat ... tgtgttacagGCTCAAGTTTTTGACCCATTCAGTATAC
EST: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG GCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACA
genomic: GGGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAGgtaatcccat ... tgtgttacagGCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACA
cgctgacttatatcaactaattctacttgcttatttaccttcttttgtgttacagGCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGCTGTCGATTCAATACCATC
aactaat putative branch site (score: 2)
cttgcttatttacctt putative PPT
ttatatcaactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcccattgcttgctgttgaacttgaatgcaccgctgacttatatcaactaattctacttgcttatttaccttcttttgtgttacagGCTCAAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGCTGTCGATTCAATACCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA