1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgatctttgcccaatgtcaagactatgtatgactgtagtgctcttgtttctaatggtggatctcctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAGTTAGATTGAACCTGCATGGAATTGTCTCTGTTGAATCAGCAACT
species | Arabidopsis thaliana |
transcript | AT1G79920.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAEST: gi|164075212|gb|ES124982.1|ES124982
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: GCACATACACG ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAEST: gi|47830571|gb|CK120255.1|CK120255
genomic: GCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAEST: gi|125065118|gb|EL132466.1|EL132466
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG ATTGGTCCCTTCCAEST: gi|125022213|gb|EL094482.1|EL094482
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCA
EST: GAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
genomic: GAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
agactatgtatgactgtagtgctcttgtttctaatggtggatctcctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAGTTAGATTGAACCTGCATGGAATTGTCTCTGTTGAATCAGCAACT
ttctaat putative branch site (score: 2)
tctcctttttgt putative PPT
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatctttgcccaatgtcaagactatgtatgactgtagtgctcttgtttctaatggtggatctcctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAGTTAGATTGAACCTGCATGGAATTGTCTCTGTTGAATCAGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA