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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatttatttctcatattttcacatcattggcttattctgatgattcttagtgtgtcagACTTCTTCTGTTTCACAGCCTGTTTCCGCTACCACATCTTCGACTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G79650.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164079398|gb|ES094129.1|ES094129
EST:     GGTTCAGCTGGTCAGGCTTCGGTTCAG                         ACTTCTTCTGTTTCACAGCCTGTTTCCGCTACCACATCTTCGACTAAG
genomic: GGTTCAGCTGGTCAGGCTTCGGTTCAGgtaatttatt ... agtgtgtcagACTTCTTCTGTTTCACAGCCTGTTTCCGCTACCACATCTTCGACTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttctcatattttcacatcattggcttattctgatgattcttagtgtgtcagACTTCTTCTGTTTCACAGCCTGTTTCCGCTACCACATCTTCGACTAAG
                               ttctgat  putative branch site (score: 3)
       tcatatttt  TA-rich tract