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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatttaatatacttaaggaaaggataggcacgtatttggcatttaaaattttgccactagatccagcttgttggctaatgtcctaacttgaaatttcttgttaacgtgctacacttccattttgaatcgcagGAAGATTACGTGAACCCGTCAACCCTTGAACCTCGGCTGGCAAGTCTAATCAAAGGCAGGCAGTTAAATAACTACAATCAGCGACACGCTAATTCTTCTT

Basic information

species Arabidopsis thaliana
transcript AT1G79000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474529|gb|EG517121.1|EG517121
EST:     ATGTTGCTAGACGCTTAGAGGAGGGGCTGTTTAAAATTGCTAACACAAAG                         GAAGATTACGTGAACCCGTCAACCCTTGAACCTCGGCTGGCAAGTCTAATC
genomic: ATGTTGCTAGACGCTTAGAGGAGGGGCTGTTTAAAATTGCTAACACAAAGgtatttattt ... tgaatcgcagGAAGATTACGTGAACCCGTCAACCCTTGAACCTCGGCTGGCAAGTCTAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcctaacttgaaatttcttgttaacgtgctacacttccattttgaatcgcagGAAGATTACGTGAACCCGTCAACCCTTGAACCTCGGCTGGCAAGTCTAATCAAAGGCAGGCAGTTAAATAACTACAATCAGCGACACGCTAATTCTTCTT
                                    cttccatttt  CT-rich tract
             aaatttcttgttaa  TA-rich tract