Sequence
atgc intronic sequence ATGC exonic sequencegtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G78610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G43050.1 (Glycine max), 3'ss of exon 3
-----------gtaacttcaaaaaactagtaactaata--gttctcatttttcaat--tctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
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gtaatgttcatctatccatccacgagttttaacagattctgttttcatgtagacatggcctaacttttcccccatgt-ttgctacagATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G23910.1 (Glycine max), 3'ss of exon 5
------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttg-----tttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
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gtaatgttcatccatcgacgagttttaagcagattctgttttcatgtagacatggcctaattcccccctccaccccgtttgctaaccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
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gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatg--agGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164233475|gb|ES093187.1|ES093187EST: ATGTAGGCGATCGATGTGAAATTGATGGAGTCCAG ATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGAT
genomic: ATGTAGGCGATCGATGTGAAATTGATGGAGTCCAGgtaacttcaa ... cttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
cttcttgtttc CT-rich tract
atttttcaattctaat TA-rich tract