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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG

Basic information

species Arabidopsis thaliana
transcript AT1G78610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G43050.1 (Glycine max), 3'ss of exon 3
-----------gtaacttcaaaaaactagtaactaata--gttctcatttttcaat--tctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
            || |     |  | |  ||||  ||   ||| |||| |    ||   ||||  |||     |  | ||| | ||||||||||| ||||| |||||||||||||||||  | ||  ||||||||||||| || || ||| |   ||| |||| | | ||    || ||  ||||  
gtaatgttcatctatccatccacgagttttaacagattctgttttcatgtagacatggcctaacttttcccccatgt-ttgctacagATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT

upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G23910.1 (Glycine max), 3'ss of exon 5
------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttg-----tttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
                    |  || ||  |  |  |   |    ||   |||     |||||     |  |      ||  |      ||||||||||| || ||||| |||||||||||||||||  | ||  |||||| |||||| || || ||| |   ||| |||| | | ||    || ||  ||||  
gtaatgttcatccatcgacgagttttaagcagattctgttttcatgtagacatggcctaattcccccctccaccccgtttgctaaccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT

upper sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
                                                 ||   | || |    | | |  |  |     ||  || |    |||||| || |   || |    | |||||||||| ||||||||||||||||| ||||| || || ||  | |||   || |||  |||  |||||| ||| |||||   |||    || |         
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatg--agGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164233475|gb|ES093187.1|ES093187
EST:     ATGTAGGCGATCGATGTGAAATTGATGGAGTCCAG                         ATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGAT
genomic: ATGTAGGCGATCGATGTGAAATTGATGGAGTCCAGgtaacttcaa ... cttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
                                          cttcttgtttc  CT-rich tract
                atttttcaattctaat  TA-rich tract