1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctggagtcctggaaagggcatttttctctcgaaacttcttagatactatggcgtgtcaagtgttctgctgacaaattttcactttttcttttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGAGCAAAACTGCACCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCT
species | Arabidopsis thaliana |
transcript | AT1G76670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTTTTCTCCACTTCTCTGCAGCAGATT TCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGEST: gi|124919339|gb|EH993109.1|EH993109
genomic: CGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTG
EST: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATT TCTATAGGCTCTCTGCAGAAGAAGTAEST: gi|86085207|gb|DR380966.1|DR380966
genomic: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCTGCAGAAGAAGTA
EST: TCTCTGCAGCAGATT TCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGEST: gi|124738583|gb|EH829837.1|EH829837
genomic: TCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTG
EST: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATT TCTATAGGCTCTCTEST: gi|301503208|gb|HO208748.1|HO208748
genomic: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCT
EST: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATT TCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGEST: gi|125065120|gb|EL132467.1|EL132467
genomic: GTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTG
EST: TGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATT TCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGC
genomic: TGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattc ... ttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGC
ctatggcgtgtcaagtgttctgctgacaaattttcactttttcttttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGAGCAAAACTGCACCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCT
tgctgac putative branch site (score: 2)
ttttcactttttcttt putative PPT
aaattttcacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggagtcctggaaagggcatttttctctcgaaacttcttagatactatggcgtgtcaagtgttctgctgacaaattttcactttttcttttggttacagTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGAGCAAAACTGCACCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCT
- - - - - - - - - - - - - - tcgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaaa