Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctaaacgatgccctgagccttttagcgattcaacagttgtttcaatatgggactaaacaatggatatgattcaccagGAGCTTAGATGATGTCCGGATGAATCTTGAA

Basic information

species Arabidopsis thaliana
transcript AT1G74390.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74390.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G00890.1 (Glycine max), 3'ss of exon 3
gtaa-atctaaacgatgccctg--agccttttagcgattcaacagttgtttcaatatgggactaaacaatggatatgattcaccagGAGCTTAGATGATGTCCGGATGAATCTTGAA---------------------------------
|||  || ||   | |  | ||  |||  |||     |        | | ||  |   |   |   |      || |  |   ||||||||| |||||||| |||||||||||||||                                 
gtactatttatttgctaacatgcaagcaattttatcttatgttgaatttctctttgctgatatttgctgc---tacggatattcagGAGCTTGGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcgattcaacagttgtttcaatatgggactaaacaatggatatgattcaccagGAGCTTAGATGATGTCCGGATGAATCTTGAA
                            gactaaa  putative branch site (score: 2)
                 tttcaatat  TA-rich tract