Sequence
atgc intronic sequence ATGC exonic sequencegttggtagtgcctttctcacaaagtactagtaaagaagctgatgatgatttcactaggttcttgagtgttgttgtgtttgttttgttgttaaaaaaaacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G73760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G73760.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G34270.1 (Glycine max), 3'ss of exon 3
gttggtagtgcctttctca--caaag---------tactagtaaagaagctgatgatgatttcactaggttcttgagtgttgttgtgtttgt-------tttgttgttaaaaaa-aacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAG
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----gtgattttttcctcaagtaaagatgtctattttcttgtacaatattatatccccatgctatgttgtccgtgcacattgttttatatgtgtcaaaacttctggtttgtgtttgatagCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTCAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGATTCAATTTTGGG
upper sequence: AT1G73760.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G05410.1 (Glycine max), 3'ss of exon 3
gttggtagtgcctttctcacaaagtactagtaaagaagctg----atgatgatttcactaggttcttga-gtgttgtt-gtgt---ttgttttgt---tgttaaaaaa--------------aacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAG
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gtgattttttttttcctcaagtaaagctgtctatttttttgtaccataattatatccccatgctatttatgtattgtccgtgcacattgttttatgtgtgtcaaaacttctggtttgtgtttgatagCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGGCTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86074752|gb|DR370509.1|DR370509EST: TCGATCAATTCCGTGACATGAGGCTTAATGTCGATAACATGACATACGAG CAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTAAT
genomic: TCGATCAATTCCGTGACATGAGGCTCAATGTCGATAACATGACATACGAGgttggtagtg ... aaaaaaacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttcactaggttcttgagtgttgttgtgtttgttttgttgttaaaaaaaacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAG
tttgttttgttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtagtgcctttctcacaaagtactagtaaagaagctgatgatgatttcactaggttcttgagtgttgttgtgtttgttttgttgttaaaaaaaacagCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA