1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactgataaatttttgtgtctaccaaatgttcgatgaaattcctgagtgaggaggtttttaacttttgttttggttttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCAACACCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGATCTTATC
species | Arabidopsis thaliana |
transcript | AT1G72970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG GAACAAGGCCTCCGAGTAACAGGAGTAATATTCAAAGATGAGAAAEST: gi|163972843|gb|EL996650.1|EL996650
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTC-GAGTAACAGGAGTAATATTCAAAGATGAGAAA
EST: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGEST: gi|125110429|gb|EL162393.1|EL162393
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAG
EST: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGAEST: gi|164122417|gb|ES105492.1|ES105492
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGA
EST: TCGTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCEST: gi|164096994|gb|EL977350.1|EL977350
genomic: TCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCEST: gi|163977229|gb|ES008105.1|ES008105
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TC-TTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCEST: gi|164167392|gb|ES202162.1|ES202162
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: AGAGTCTTGATCTACGCCACCGTGCCAAAAAATCGTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTACAAAGATGAGAAAEST: gi|124996360|gb|EL068629.1|EL068629
genomic: AGAGTCTTGATCTACGCCACCGTG-CAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATT-CAAAGATGAGAAA
EST: GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCEST: gi|124983174|gb|EL055924.1|EL055924
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: CTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: CTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
cgatgaaattcctgagtgaggaggtttttaacttttgttttggttttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATCAACACCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGATCTTATC
ttttaac putative branch site (score: 2)
tttttaacttttgttt TA-rich tract