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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctctctgctaataaaaactcattgagaacatagcttttagcatcacactatctaacttttacattttggcagAGAGCATTACTTAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCC

Basic information

species Arabidopsis thaliana
transcript AT1G71380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71380.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G48140.1 (Glycine max), 3'ss of exon 3
------------gtttgtctctctgctaata--aaaactcattgagaacatagcttttagcatcacacta-tctaact-----------tttacattttg-----gcagAGAGCATTACTTAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCC
              ||||   | ||| |  |   |||   ||| |||    || | || |||| |   || ||| |||           |||   | |||      ||||||||||| || ||    || |  || ||||| ||||| ||||||| |||||||||||| || ||||| ||||||||  | ||||| |||||   ||| |
gtatatctatcatattgttcatgtgccagcattgaaaaatattaagagtcaagttgtttgcatgatgttaatctgactcagtgggtttatttgtttattgctactacagAGAGCATTGCTGAATGGTGATAAGAATTTTGATCAATACAAGCAAGAAGCTGAGAATTTTATGTGCAAGATCCTTCCCAACTCTCCCTCTTCAAGTACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattgagaacatagcttttagcatcacactatctaacttttacattttggcagAGAGCATTACTTAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCC
                                atctaac  putative branch site (score: 2)
                                   taacttttacatttt  TA-rich tract