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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaaatccttaaactatctctagtggttttagcgatacaatgttgagatagagtaagctgacatgaggctgtgattgtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC

Basic information

species Arabidopsis thaliana
transcript AT1G71190.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g73120.1 (Oryza sativa), 3'ss of exon 4
----gttagtcaaatccttaaactatctct----agtggttttagcgatacaatgttgaga---tagagtaagctgacatgaggctgtgattgtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC
    | |  || |||  || ||| |||  |    ||   | ||  |  |||    || | |   |  | |  |||| | | |  || | || ||||||| || || || ||| | ||||||||  |  ||||||||||||| |||||||  || ||  ||||||||||| || | || ||||||||||||||||| 
gcaagcttctccaattgtttaaccatccttcctcagaaatattttctgtacttctttcacaccttccattttgctgccttaa--ctcttat-gtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACACATTCG

upper sequence: AT1G71190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G19950.1 (Glycine max), 3'ss of exon 4
----gttagtcaaatccttaaactatc-----tctagtggttttagcgatacaatgttgaga----tagagtaa--gctgacatgaggctgtgattgtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC
     | || | |||  ||||   |||     |  ||| |  ||||  |    |  |  | |    |  | |||  ||||  ||    |  | |    || || || ||||||||  | ||||||||| | || || ||||| || |||||||| |||||  | ||||||||||| |||||||||||||| |||||||| 
ccatttgaggctaattgttaagtaatcaaccattcagttgagttagttacctgaactgcaaactcttgaaataattgctgttatcttccatttaccccagATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCA

upper sequence: AT1G71190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G05100.1 (Glycine max), 3'ss of exon 4
---------------gttagtca---aatccttaaactatctctagtggttttagcgatacaatgttgagatagagtaagctgacatgaggctgtgattgtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC
               |||    |   || | || |  |   | ||||    | | |  || | | |||| ||| | |   ||    |     | ||     || || || ||||||||  | ||||||||| | || || ||||| || |||||||| |||||  | ||||||||||| |||||||||||||| |||||||| 
catttgaggttaattgttgagtacacaaccattcagttgagt-tagttacctgaactgtaaactattgaaata-attgctcttgtcttccatt-tgcccccagATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCA

upper sequence: AT1G71190.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv12s0034g02170.t01 (Vitis vinifera), 3'ss of exon 5
--gttagtcaaatccttaa---actatctctagtggttttagcgatacaatgttgagatagagtaagctg---acatgaggctgtgatt-------gtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC
  ||| || |  ||   ||   ||     | || |||||     |      |||    |  | ||   ||   ||       | | |||       | |||||||| ||||||||| | ||||||||  |||| |||||| ||||||||||||  |||||||| ||||| || ||  ||||||||||||| || ||||||
tggtttgtgatgtctagaacagacgtcgccaagaggtttgcataactggcagttattgtgaaatatattgcttactgatattttttattttcttctgcagGTTTTTTGATGACCTTCGCCCATATGCACTGGTCCAGTTTCTTCCTTGCATTGCCATTCCGTTAATGGCAATATTGCTGCCTCCAATGTACACGCATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttagcgatacaatgttgagatagagtaagctgacatgaggctgtgattgtagGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGTTTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATTCC
                              agctgac  putative branch site (score: 3)
         atacaat  TA-rich tract