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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacttataattttggtttatgtctatatatcttgtttattcatttatgtagacttgtcctgaattttttgttttgtcttcttgatgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTACTGATCTTAACCTTACTATCACTAAGGCGTACATATCTTCTGATGGTG

Basic information

species Arabidopsis thaliana
transcript AT1G69040.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125247630|gb|EL261715.1|EL261715
EST:     TAATGACTCTTGCAAGAAGGCAACTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: TAATGACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: gi|152038350|gb|BP814558.2|BP814558
EST:     ACTCTTGCAAGAAGGCAACTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: gi|152033851|gb|BP817681.2|BP817681
EST:     ACTCTTGCAAGAAGGCAACTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: gi|152034011|gb|AU239517.2|AU239517
EST:     ACTCTTGCAAGAAGGCAACTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: gi|152034315|gb|BP825151.2|BP825151
EST:     ACTCTTGAAAGAAGGCAACCTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAA-CTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: gi|152033946|gb|BP820708.2|BP820708
EST:     ACTCTTGCAAGAAGGCAACTGTGATAAGG                         GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttatgtagacttgtcctgaattttttgttttgtcttcttgatgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTACTGATCTTAACCTTACTATCACTAAGGCGTACATATCTTCTGATGGTG
                                       tcttgat  putative branch site (score: 4)
                    tgaattttttgtttt  TA-rich tract