1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattacgattaattttaattacctgattatcttctatctgattggttcattagtgattcataatcgggttgataaagaactgtttttaaacattaaaacgtctcaacatttacattatattagtaagtaacaaagattattatcaacattaaaaaatgatttttatttgacattttatttgccaatcttgcagTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAG
species | Arabidopsis thaliana |
transcript | AT1G68670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTACACCGTCGATTCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATG TTGCTACACCAAAGCAAAEST: gi|86080848|gb|DR376605.1|DR376605
genomic: ATTACACCGTCGATTCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATGgtaattacga ... aatcttgcagTTGCTACACCAAAGCAAA
EST: TCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATG TTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAEST: gi|86067990|gb|DR363747.1|DR363747
genomic: TCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATGgtaattacga ... aatcttgcagTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAA
EST: ATTACACCGTCGATTCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATG TTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAA
genomic: ATTACACCGTCGATTCCTAAACGCGCTTCAGCAGCTTGGAGGATCTCATGgtaattacga ... aatcttgcagTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAA
attatcaacattaaaaaatgatttttatttgacattttatttgccaatcttgcagTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAG
atttgac putative branch site (score: 4)
aacattaaaaaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattacgattaattttaattacctgattatcttctatctgattggttcattagtgattcataatcgggttgataaagaactgtttttaaacattaaaacgtctcaacatttacattatattagtaagtaacaaagattattatcaacattaaaaaatgatttttatttgacattttatttgccaatcttgcagTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA