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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaacattataacacattatctctctttcttttttggctaagttatagtatatgattgatgaatatatccacagGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGAATAACTTAGCTATAGGAGTGTTGCTATCGAATCAGAGCCAATATCACGA

Basic information

species Arabidopsis thaliana
transcript AT1G67150.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380409|gb|EG423001.1|EG423001
EST:     GAATTTCCTTATTACCTCCGATGAAGACGTGGCTATACTCACTTCAGCAG                         GAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGA
genomic: GAATTTCCTTATTACCTCCGATGAAGACGTGGCTATACTCACTTCAGCAGgtacaaacat ... atatccacagGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGA
EST: gi|116380402|gb|EG422994.1|EG422994
EST:     GCTATACTCACTTCAGCAG                         GAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGA
genomic: GCTATACTCACTTCAGCAGgtacaaacat ... atatccacagGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctttcttttttggctaagttatagtatatgattgatgaatatatccacagGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGAATAACTTAGCTATAGGAGTGTTGCTATCGAATCAGAGCCAATATCACGA
                                  gattgat  putative branch site (score: 4)
                   taagttatagtatat  TA-rich tract