1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagaattcttgtctgattaatatcaagctattgcttttggaaagatgtgatcttttgttctttcttgtgacgatgacattgctatatcttgtgattcttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTAC
species | Arabidopsis thaliana |
transcript | AT1G66520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGAT GAAGCATTCTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAEST: gi|86049622|gb|DR345377.1|DR345377
genomic: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGATgtaagaattc ... ttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACA
EST: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGAT GAAGCATTCTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAEST: gi|19877472|gb|AU238303.1|AU238303
genomic: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGATgtaagaattc ... ttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACA
EST: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGAT GAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAEST: gi|86049624|gb|DR345379.1|DR345379
genomic: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGATgtaagaattc ... ttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACA
EST: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGAT GAAGCATTCTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACA
genomic: ATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGATgtaagaattc ... ttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACA
ttttgttctttcttgtgacgatgacattgctatatcttgtgattcttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTAC
ttcttttat CT-rich tract
attcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattcttgtctgattaatatcaagctattgcttttggaaagatgtgatcttttgttctttcttgtgacgatgacattgctatatcttgtgattcttttatgcagGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT