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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG

Basic information

species Arabidopsis thaliana
transcript AT1G63800.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 3'ss of exon 3
gtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
|||||    ||   ||    | | | |||   ||| |||||      ||| |  ||   |  | || |||| |  || |     |  ||| |  ||   ||| ||||| |||||||| ||| | ||||| ||||||||||| |||||||| ||||| |
gtgag---gatttgatgtccatacccttttctggaatgattgaag--cttgtgtaa---tcaattgttgctgacctgct----tttgttggacttgaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTTG

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G37650.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------gtgagttcaatcgaatcagtagatcttttggaggagtg-atta--tgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
                                                    || || |    || |    ||    | | |||  |||   |||| |     || ||    |      |||  |  |||      ||| | | || |  |  ||||| |||||||||||  ||||||||||||||||||| ||||| || ||||| |
gtaagttgtttcactgcaaccatagcttcattgaatcattgtttatatcatatttaagcagcacaattatgctccatgggaagtctattggctgttgcacaaacacattgcaaaactcacttgctcattaatatgattt-tctctgat-gtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTG

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G01940.3 (Glycine max), 3'ss of exon 3
-----------------------------------------------gtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatg--cagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
                                                    || || |    ||  | ||  |     |||    |  ||    ||   || |     ||     || | | | |        | || |    |||||   ||||| |||||||||||  |||||||||||| |||||| ||||| || ||||| |
gtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaa-atatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTTTG

upper sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EDP09753 (Chlamydomonas reinhardtii), 3'ss of exon 3
gtgagtt-caatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
|| |||| |    |    ||  |  |    ||  |  |   |  |   | || || ||  ||| |     |      |     ||  ||   ||        ||||||| || ||||| || || || || || |||||||||||||||||||||||||
gtaagttgccgcagcgcaagcgggccccgcggccgc-tatctcggcatcgtcgccgaaagttgggcccaaccgccccgca---ccggttcacatcaatgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
                    ttatttgttat  TA-rich tract