Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcaaacaacttttggaattttatttgttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC

Basic information

species Arabidopsis thaliana
transcript AT1G61520.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G47960.1 (Glycine max), 3'ss of exon 2
-------gtaatgttcaaacaacttttggaattttatttgttttgagaactt-catgatgttcaaaatttggagatgttctg-----attcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC
        | ||||    |     |||  || | || |   |    ||| |  |||| || |       | ||| || | |      |||    ||||||| | || |||||||||||||| |||||||| || ||||||||||| ||||| || ||||| ||||||||||| | |||||||||||| || ||||| |||
gttaacacttatgtatctatgctatttataagtgtaataaataaatgaaatggcatggtggtggtggaattgagttgatttagcatcatttgcattgcagCCTTCCGGGTGACTATGGATTTGACCCTCTGGGACTTTCAGACCCTGAAGGAACAGGAGGGTTCATTGAGCCGAAATGGCTAGCATATGGTGAGATAATC

upper sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G00640.1 (Glycine max), 3'ss of exon 2
----------gtaatgttcaaacaacttttg-gaattttatttgttttgagaacttcatgatgttcaaaat--ttggagatgttctgattcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC
              | |  |  ||| ||    ||    ||  |  || |  |   |  || || | ||| |   |  |  ||   | ||     ||||||| | || |||||||||||||| |||||||| || ||||| ||||| ||||| || ||||| ||||||||||| | |||||||||||| || ||||| |||
gaataacactagtgtatctatgcaatttagaagagaagtaaataattagttactatgctggtgctgaaattgactttatctggcatcatgtgcattgcagCCTTCCGGGTGACTATGGATTTGACCCTCTGGGACTTTCGGACCCTGAAGGAACAGGAGGGTTCATTGAGCCGAAATGGCTAGCATATGGTGAGATAATC

upper sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0024g00040.t01 (Vitis vinifera), 3'ss of exon 2
gtaatgttcaaacaacttttggaatt-ttatttgttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC
         | |||  |||    ||   |  | || |  | |||   |  |  || |    ||||   || | |  ||| | |  |||  | || ||||||||||| ||||| || || || ||||||||||| ||||| || ||||| ||||| |||||||||||| |||| ||||| ||| |||||
-------gtatacatttttccatataactgatggtatacaaaacaaaactacttttactgattgg--gtggttt--ttcatgtcacagTCTTCCAGGTGACTATGGGTTCGATCCACTGGGACTTTCAGACCCTGAAGGCACAGGAGGGTTCATCGAGCCAAGATGGTTAGCCTACGGGGAGGTCATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125320295|gb|EL334380.1|EL334380
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|47832212|gb|CK121896.1|CK121896
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125258758|gb|EL272843.1|EL272843
EST:     CTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: CTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125283950|gb|EL298035.1|EL298035
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTA
EST: gi|125078883|gb|EL141101.1|EL141101
EST:     GACCATTGTGGTTTGCTTCTATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAG
genomic: GACCATTGTGGTTTGCTTC-ATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAG
EST: gi|125305940|gb|EL320025.1|EL320025
EST:     GACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: GACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125241930|gb|EL256015.1|EL256015
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCA
EST: gi|125070045|gb|EL135604.1|EL135604
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGAC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGAC
EST: gi|124814829|gb|EH899695.1|EH899695
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGA
EST: gi|116427572|gb|EG470164.1|EG470164
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124857420|gb|EH941857.1|EH941857
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTT
EST: gi|125059962|gb|EL128639.1|EL128639
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGG
EST: gi|125243411|gb|EL257496.1|EL257496
EST:     GTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: GTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124732466|gb|EH823868.1|EH823868
EST:     ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125242336|gb|EL256421.1|EL256421
EST:     GCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: GCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124758805|gb|EH848935.1|EH848935
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCT
EST: gi|124899847|gb|EH974465.1|EH974465
EST:     TTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125284236|gb|EL298321.1|EL298321
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACC
EST: gi|124832578|gb|EH917017.1|EH917017
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCT
EST: gi|124926723|gb|EL004522.1|EL004522
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTA
EST: gi|125193651|gb|EL208605.1|EL208605
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCC
EST: gi|116429319|gb|EG471911.1|EG471911
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124886769|gb|EH965671.1|EH965671
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGT
EST: gi|125028945|gb|EL101214.1|EL101214
EST:     TCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGG
genomic: TCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGG
EST: gi|124787605|gb|EH877284.1|EH877284
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGAT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGAT
EST: gi|47832033|gb|CK121717.1|CK121717
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|86058741|gb|DR354498.1|DR354498
EST:     AGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGCCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125061505|gb|EL130144.1|EL130144
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGA
EST: gi|125247405|gb|EL261490.1|EL261490
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTA
EST: gi|125265979|gb|EL280064.1|EL280064
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGAC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGAC
EST: gi|124757179|gb|EH847309.1|EH847309
EST:     TTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGAACCCTCTTGGTCTTTCAGACCCAGAAG
genomic: TTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGA-CCCTCTTGGTCTTTCAGACCCAGAAG
EST: gi|125096905|gb|EL153540.1|EL153540
EST:     TCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125020709|gb|EL092978.1|EL092978
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125309649|gb|EL323734.1|EL323734
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125228397|gb|EL242482.1|EL242482
EST:     TTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|47828771|gb|CK118455.1|CK118455
EST:     GGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: GGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|86058743|gb|DR354500.1|DR354500
EST:     AGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGCCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124863354|gb|EH947791.1|EH947791
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTT
EST: gi|86058745|gb|DR354502.1|DR354502
EST:     AGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGCCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125308347|gb|EL322432.1|EL322432
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTC
EST: gi|125267531|gb|EL281616.1|EL281616
EST:     CTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTC-TTCAGACCCAGAAGG
genomic: CTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125045901|gb|EL118170.1|EL118170
EST:     AGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125036859|gb|EL109128.1|EL109128
EST:     TACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125117021|gb|EL166327.1|EL166327
EST:     CTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: CTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|47828390|gb|CK118074.1|CK118074
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124820176|gb|EH905042.1|EH905042
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCCGACCC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTC-GACCC
EST: gi|124765807|gb|EH855937.1|EH855937
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125052248|gb|EL124103.1|EL124103
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCG
EST: gi|124737761|gb|EH829163.1|EH829163
EST:     CTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: CTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125311351|gb|EL325436.1|EL325436
EST:     ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTT-CAGACCCAGAAGG
genomic: ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125240238|gb|EL254323.1|EL254323
EST:     TTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124982095|gb|EL054924.1|EL054924
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124909447|gb|EH983527.1|EH983527
EST:     TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124888148|gb|EH967050.1|EH967050
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTC
EST: gi|125106567|gb|EL159956.1|EL159956
EST:     TTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124955167|gb|EL030202.1|EL030202
EST:     TTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124797268|gb|EH886947.1|EH886947
EST:     ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
genomic: ACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
EST: gi|86058746|gb|DR354503.1|DR354503
EST:     AGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGCCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|164051056|gb|ES045455.1|ES045455
EST:     ATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: ATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125208341|gb|EL223295.1|EL223295
EST:     AGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAA
genomic: AGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAA
EST: gi|125064113|gb|EL131853.1|EL131853
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGAACTATGGATTCGACCCTCTTGGTCTTTCAGAC
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGA-CTATGGATTCGACCCTCTTGGTCTTTCAGAC
EST: gi|124756688|gb|EH846818.1|EH846818
EST:     ATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: ATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125231084|gb|EL245169.1|EL245169
EST:     CTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: CTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125033566|gb|EL105835.1|EL105835
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGG
EST: gi|125021827|gb|EL094096.1|EL094096
EST:     TCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|164118920|gb|ES141306.1|ES141306
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGG
EST: gi|124826800|gb|EH911666.1|EH911666
EST:     TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCC
genomic: TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCC
EST: gi|124780967|gb|EH870910.1|EH870910
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGA
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGA
EST: gi|152035165|gb|BP846580.2|BP846580
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124720100|gb|EH811502.1|EH811502
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGGCTATGGATTCGACCCTCTTGGTCT
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCT
EST: gi|47828074|gb|CK117758.1|CK117758
EST:     AGACCATTGTGGTTTGCCTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125088810|gb|EL147412.1|EL147412
EST:     TTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: TTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|125092613|gb|EL150436.1|EL150436
EST:     GACCATTGTGGTTTGCTTCATCGCAGAGTCTCTTCTTACTTGGATGGCAG                         CTTACCTGGTGACTAATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
genomic: GACCATTGTGGTTTGCTTCATCGCAGAGTCTC-TCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACT-ATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
EST: gi|124941138|gb|EL017522.1|EL017522
EST:     TTGGATGGCAG                         CTTACCTGGTGACTATTGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
genomic: TTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTA-TGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAG
EST: gi|124903813|gb|EH977893.1|EH977893
EST:     TCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAG
genomic: TCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAG
EST: gi|47829362|gb|CK119046.1|CK119046
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|47828850|gb|CK118534.1|CK118534
EST:     AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: AGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
EST: gi|124809113|gb|EH894881.1|EH894881
EST:     TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTACTTGGTCTTTCAGACCC
genomic: TGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCT-CTTGGTCTTTCAGACCC
EST: gi|125264386|gb|EL278471.1|EL278471
EST:     CTCTCTTACTTGGATGGCAG                         CTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG
genomic: CTCTCTTACTTGGATGGCAGgtaatgttca ... cttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC
                                     ttctgat  putative branch site (score: 3)
                                     ttctgattcttctt  CT-rich tract
                    ttcaaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgttcaaacaacttttggaattttatttgttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcagCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA