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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggctatgtggattatgggtttggttatttgagcagtgtaccagacttttagtttagaattatgaggtctaacattttcactcttgctcttgaagtgtagTGGTTCGAGCTTTTACTGGACATAGATCCAATTGTTCTGCTGTTGAATTTCATCCCTTTGGTGAATTTTTGGCATCGGGATCTAGTGACGCGAATCTAAA

Basic information

species Arabidopsis thaliana
transcript AT1G61210.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416003|gb|EG458595.1|EG458595
EST:     TGGAGCTTCTTCGGGTGTGATAAAGCTGTGGGATGTTGAAGAAGCAAAGA                         TGGTTCGAGCTTTTACTGGACATAGATCCAATTGTTCTGCTGTTGAATTTC
genomic: TGGAGCTTCTTCGGGTGTGATAAAGCTGTGGGATGTTGAAGAAGCAAAGAgttagtttat ... tgaagtgtagTGGTTCGAGCTTTTACTGGACATAGATCCAATTGTTCTGCTGTTGAATTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagtttagaattatgaggtctaacattttcactcttgctcttgaagtgtagTGGTTCGAGCTTTTACTGGACATAGATCCAATTGTTCTGCTGTTGAATTTCATCCCTTTGGTGAATTTTTGGCATCGGGATCTAGTGACGCGAATCTAAA
                     gtctaac  putative branch site (score: 2)
                             ttttcactcttgctct  CT-rich tract
       tttagaattat  TA-rich tract