Sequence
atgc intronic sequence ATGC exonic sequencegtatggttttcttgtgtagagttgtgttgtttggatcacttgcaggtcgccttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G59990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G59990.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G40250.1 (Glycine max), 3'ss of exon 2
----------------------gtatggtt-ttcttgtgtaga-gttgtgttgtttgga-tcacttgcaggtcgccttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT
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tatgtggtatatttctgattttacataattatgccagtgtaaaagatatgtgaattaagctttgatgcttattacgttgtgt-tatatttcttactgtcagGTGTTTGATGAAGCTGACTTGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGAT
upper sequence: AT1G59990.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0026g00640.t01 (Vitis vinifera), 3'ss of exon 3
gtatggttttcttgtgtagagtt-gtgtt-gtttggatcacttgc-aggtcgcc--ttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT
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gtaaattttttctcagaatcatccatgtttattttggtgatttgagaaatcacagacctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124960864|gb|EL035499.1|EL035499EST: AGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAATATGTG GTCTTTGATGAAG
genomic: AGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAATATGTGgtatggtttt ... ttgctttcagGTCTTTGATGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgttgtttggatcacttgcaggtcgccttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT
ttgctttc CT-rich tract
ttttgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggttttcttgtgtagagttgtgttgtttggatcacttgcaggtcgccttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC