1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggaatctctttcgagaagttttgattgatgtttgctgtaaattcctagctaataaaagattatgatcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATG
species | Arabidopsis thaliana |
transcript | AT1G57720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAGACTEST: gi|124940508|gb|EL016953.1|EL016953
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACT
EST: TTCCTTAAGATGAACTCTATTGGAAAG GTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTEST: gi|152035102|gb|BP844635.2|BP844635
genomic: TTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATT
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTEST: gi|125025478|gb|EL097747.1|EL097747
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATT
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAEST: gi|116473109|gb|EG515701.1|EG515701
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGA
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTEST: gi|125001950|gb|EL074219.1|EL074219
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATT
EST: CGTCACTAACAAGTCACCTGAGTTCCTTAAAGATGAACCCTATTGGAA-G GTTCCTGTGCTTEST: gi|152035939|gb|BP865394.2|BP865394
genomic: CGTCACTAACAAGTCACCTGAGTTCCTTAA-GATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTT
EST: GCGTCACTAACAAGTCACCTGAGTTC-TTAAGATGAACCCTATTGGAAAG GTTC-TGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTEST: gi|116410809|gb|EG453401.1|EG453401
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATT
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTEST: gi|125025103|gb|EL097372.1|EL097372
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATT
EST: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAG GTTCCTGTGCTTGAGACT
genomic: GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGgtatggaatc ... atcccactagGTTCCTGTGCTTGAGACT
tttgattgatgtttgctgtaaattcctagctaataaaagattatgatcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATG
agctaat putative branch site (score: 3)
tcccact putative PPT
taataaaagattatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaatctctttcgagaagttttgattgatgtttgctgtaaattcctagctaataaaagattatgatcccactagGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA