1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgtttttcggttactttcatatcaaacttcaaacattcaaacaccaggcttatctttctttttttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGATCAAGAAGGAGGTCCCA
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070961|gb|DR366718.1|DR366718
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070960|gb|DR366717.1|DR366717
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465716|gb|EG508308.1|EG508308
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070963|gb|DR366720.1|DR366720
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465699|gb|EG508291.1|EG508291
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|164146865|gb|ES090967.1|ES090967
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: TGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465698|gb|EG508290.1|EG508290
genomic: TGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465718|gb|EG508310.1|EG508310
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465735|gb|EG508327.1|EG508327
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070962|gb|DR366719.1|DR366719
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116482410|gb|EG525002.1|EG525002
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACT-CTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|164174507|gb|ES016214.1|ES016214
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGEST: gi|86070954|gb|DR366711.1|DR366711
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAG
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070959|gb|DR366716.1|DR366716
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGEST: gi|86070957|gb|DR366714.1|DR366714
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAG
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|86070956|gb|DR366713.1|DR366713
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|164111457|gb|ES039902.1|ES039902
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116482409|gb|EG525001.1|EG525001
genomic: CACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCEST: gi|116465734|gb|EG508326.1|EG508326
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
EST: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAG CATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
genomic: CTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgttttt ... ttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGC
atatcaaacttcaaacattcaaacaccaggcttatctttctttttttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGATCAAGAAGGAGGTCCCA
cttatctttctttttt CT-rich tract
ttatctttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttttcggttactttcatatcaaacttcaaacattcaaacaccaggcttatctttctttttttatctgcagCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGATCAAGAAGGAGGTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG