Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgaaacatcagtctttgtacttatattaaaactttagtagattatgaagtgtgatttacttgtttcaatgtatgcgtttgtaagatgcttgatactaggattgattgattccaagtaatcaatttctgattttaatgtgtgtagGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G56000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125309409|gb|EL323494.1|EL323494
EST:     TTTTTGGGAGTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAG                         GAAGGGGATGCAAAGAAGTATGTGGG
genomic: TTTTTGGGAGTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAGgttttgaaac ... atgtgtgtagGAAGGGGATGCAAAGAAGTATGTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatactaggattgattgattccaagtaatcaatttctgattttaatgtgtgtagGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTG
                                        ttttaat  putative branch site (score: 3)
                          taatcaatttctgatt  TA-rich tract