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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcatttgttgttatctatccatcaacattgtttcactaatacttgtgattatgattgaaagtctgtagtgaaacgtatcttttggaactccaaagttctttctattaagttaacatattgatttgccaaaatgttgcagCCGGAGCTTGTACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTAAGCTTTTCTTTCTATTTTCGACACATGATGT

Basic information

species Arabidopsis thaliana
transcript AT1G55300.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164073487|gb|ES077708.1|ES077708
EST:     GTCGAGAGCCTGACCTTAAT                         CCGGAGCTTGTACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGC
genomic: GTCGAGAGCCTGACCTTAATgtaattttca ... aatgttgcagCCGGAGCTTGTACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactccaaagttctttctattaagttaacatattgatttgccaaaatgttgcagCCGGAGCTTGTACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTAAGCTTTTCTTTCTATTTTCGACACATGATGT
                               tattgat  putative branch site (score: 3)
                  tattaagttaacatat  TA-rich tract