1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattgatatgtgcattactgaatatcctaggcggctaggcggccatttaatctctaaagcaggattgctatctcagaagttttaaatttgttttaaggtttgtttttttttgcttagaagatgagtgtggcttgaaaactaagggttcatggtttttttttggaaacttcaacagATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCA
species | Arabidopsis thaliana |
transcript | AT1G53320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCTGATGATTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAG ATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCEST: gi|301501484|gb|HO207024.1|HO207024
genomic: GATGCTGATGATTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGgtattgatat ... acttcaacagATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACC
EST: GATGCTGATGATTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAG ATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACA
genomic: GATGCTGATGATTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGgtattgatat ... acttcaacagATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACA
atgagtgtggcttgaaaactaagggttcatggtttttttttggaaacttcaacagATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCA
tttttttttggaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatatgtgcattactgaatatcctaggcggctaggcggccatttaatctctaaagcaggattgctatctcagaagttttaaatttgttttaaggtttgtttttttttgcttagaagatgagtgtggcttgaaaactaagggttcatggtttttttttggaaacttcaacagATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT