1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacattgacagtaacatttatgttttgatatgtaactgtaaaaatctttgcagggcatcaattgagtgatatattttgttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAGCTTGCGTTCTTCTTGCAGTTTGCTCCTCT
species | Arabidopsis thaliana |
transcript | AT1G52590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTCGTACTAGTCGAAAACGATAG GTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTEST: gi|125260885|gb|EL274970.1|EL274970
genomic: GTGTCGTACTAGTCGAAAACGATAGgtacattgac ... gttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTT
EST: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAG GTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCAEST: gi|124903042|gb|EH977122.1|EH977122
genomic: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGgtacattgac ... gttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCA
EST: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAG GTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATEST: gi|19797858|gb|AU229504.1|AU229504
genomic: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGgtacattgac ... gttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAAT
EST: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCCAAAACGATAG GTCTTACATAAAGTCAGAAGCAGTTTT-AAGATCATGAAATACATTGACTTEST: gi|125302047|gb|EL316132.1|EL316132
genomic: GGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGgtacattgac ... gttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTT
EST: GAAGAGCTCCTGACGATATATTCGAGTGTCGTACTAGTCGAAAACGATAG GTCTTACATAAAGTCAGAAGCAGTTTTGAAGAT
genomic: GAAGAGCTCCTGACGATATA-TCGAGTGTCGTACTAGTCGAAAACGATAGgtacattgac ... gttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGAT
taactgtaaaaatctttgcagggcatcaattgagtgatatattttgttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAGCTTGCGTTCTTCTTGCAGTTTGCTCCTCT
atgtaac putative branch site (score: 3)
tattttgttttttc putative PPT
tgatatattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattgacagtaacatttatgttttgatatgtaactgtaaaaatctttgcagggcatcaattgagtgatatattttgttttttcagGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAGCTTGCGTTCTTCTTGCAGTTTGCTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC