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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcaagctttcgctttgctttcatacttttgtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcagGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAGACGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G52360.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 3
------gtaatttcaagctttcgctt-tgctttcatacttttgtaccgt---tatttctgc-tactaacgactgggatggtaaaaacattggtt-tgcagGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAGACGCAG
      || |  |    ||   |||   |     |||   |   |  ||   || ||   | |  |   || | |  || |   | |||   |  ||||||||||| ||||||||||| ||||||||  | ||||| |||||||||||  | |||
ctgtctgttacatgggactactgctgacgtagaaatataatcaaaaagtagatagttggacgttttgctgaatcgtctgatgttaccatcattaatgcagGATTCTAGCAAGTTTGTACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAG

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 3
--gtaatttcaagctttcgctttgctttc-------atacttttgtacc-gttatttctgctactaac-gactgggatggtaaaaacattggtt-tgcagGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAGACGCAG
   | |  | |  ||||  || ||   |        ||| ||   ||   | || ||   ||  |  | || |    || |   | ||| | |  ||||||||||| ||||||||||| ||||||||  | ||||| |||||||||||  | |||
tgcttacgttattcttttactgtggagtttagaaagataattaaatagtagatacttggactttttgctgaatcatgtgatgttaccatcgttaatgcagGATTCTAGCAAGTTTGTACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAG

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 3
-----gtaatttcaagctttcgctttgctttcatacttttgtaccgttatttctgctactaacgactgggatggtaaaaacattgg-------tttgcagGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAGACGCAG
      ||||||      | |  | |  |||   ||||        ||        |  |||    |  ||      |  |||||        | ||||||||| | ||||||||||| ||||||||  |||| || |||||||||||| | |||
cttatttaatttatctaataccgtctattttttaacttggagcaaattgcagaaagtggtaatttttctgaaatatgactcattgtgcttgtttctgcagGATTTTAGCAAGTTTGTACTCTGGAACTGTGTGCATCTGGAACTACCAGTCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcagGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAGACGCAG
                  tactaac  putative branch site (score: 0)
                                    taaaaacatt  TA-rich tract