1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaaagtgaattacaaagcaagttcttgattttgattaatgcatgagaaatgaatcattattgatgcaaactttgtatatatctgaaatcacagGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAAAACTAG
species | Arabidopsis thaliana |
transcript | AT1G51680.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATTCGGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAG GTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCAEST: gi|124709231|gb|EH800633.1|EH800633
genomic: AGGATTCGGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGgtaaaaagtg ... gaaatcacagGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCA
EST: AAGATGATGTGAAGCAATTCGTGTCGAAACAG GTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCACTGAATCCATTCCT
genomic: AAGATGATGTGAAGCAATTCGTGTCGAAACAGgtaaaaagtg ... gaaatcacagGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCACTGAATCCATTCCT
tgcatgagaaatgaatcattattgatgcaaactttgtatatatctgaaatcacagGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAAAACTAG
tattgat putative branch site (score: 3)
aaatgaatcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagtgaattacaaagcaagttcttgattttgattaatgcatgagaaatgaatcattattgatgcaaactttgtatatatctgaaatcacagGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAAAACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA