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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttacctgtgtagttctaggagtactgtagtttgttgatcactacagccacagatatcattctgattttgactctggacttgtgtaatcatctttgcagGGAAGAGTTACCTCCGTCAGTGCTCAACCTGTTGACGTGGTTTCCAGTAGCAGAGTATCGTCTTTTAGGCAATTAGACATTGCTCCACCTCAACTTAATG

Basic information

species Arabidopsis thaliana
transcript AT1G48110.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164197801|gb|ES166857.1|ES166857
EST:     CTACTTCATCATCAGGACAAGCTCGCCAG                         GGAAGAGTTACCTCCGTCAGTGCTCAACCTGTTGACGTGGTTTCCAGTAGC
genomic: CTACTTCATCATCAGGACAAGCTCGCCAGgtataatttc ... atctttgcagGGAAGAGTTACCTCCGTCAGTGCTCAACCTGTTGACGTGGTTTCCAGTAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagccacagatatcattctgattttgactctggacttgtgtaatcatctttgcagGGAAGAGTTACCTCCGTCAGTGCTCAACCTGTTGACGTGGTTTCCAGTAGCAGAGTATCGTCTTTTAGGCAATTAGACATTGCTCCACCTCAACTTAATG
                     ttttgac  putative branch site (score: 3)
                                           tcatcttt  putative PPT
         atatcatt  TA-rich tract