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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcagCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGA

Basic information

species Arabidopsis thaliana
transcript AT1G47380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G04210.1 (Glycine max), 3'ss of exon 2
gtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttat-attcttatatcattctg-gtgaaggctatgtttgaggttttattgttttcttgcatttcagCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGA
                           |||  || |  | |||  |      |||| |   | | || ||| | ||  || | |||   ||  ||  |  | | | | |  || | || ||| |||| |   |||||   || || ||||| |||||||| ||| | || ||||||||||||||  | |  |||||||| || ||||| || |||||||||||||||||| | ||
---------------------------tgac-tggt--aggtcttatatttttgaatt-acccgagtttttgttatatttttctcaacttgtatgctgattttatat-acattattttctttgcttgta---cagCACAAACATCAGGAACAACTGTAACCTTTATGATTGTAGAAGGATGGGTTTTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAGCCTTCCGA

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G09020.1 (Glycine max), 3'ss of exon 3
gtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcagCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGA
                           | |  | ||  ||||   ||  | || ||||    ||||  |     || |||||   ||||| |  |   | | ||||   || |||| | || |||||   ||  ||     |||||||| ||||| || ||||||||  ||||||||||||| || |  |||||||| || ||||| || |||||| |||||||  || ||||
----------------------atcaattac-taatggaagtt--aatggtgt-aactgacttgtgattgacagtttttatac--ttctgatttaatatttttttgttattatattttgttgttgcagGCCAAAAA-----TCTGGAACAACTGTCACCTTTGTCATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCGTACTTGAATCTTCTGA

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0001g10700.t01 (Vitis vinifera), 3'ss of exon 3
gtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttat-tgttttcttgcatttcagCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGA
                              ||   |||      || |  | || | ||  || | | || | | |||| |  |||     | ||   |   ||  |  ||| || ||  | |||   |||||||| | || || ||||| ||||| || ||||| ||| |||||||||||||||| | |||||| || || ||||| || || |||||||||||  |||||||
----------------------------cttgattttctctctgcatgctgctgcattctccttt-ttttaagagtctttt--catctcatttaaatgtgacttgaaaatttgatatggctactt---tttcagCACGAACTTCAGGAACAACTGTTACCTTTGTTATAATAGAAGGATGGGTGGTAACTGTTGCTTCCGTTGGTGATTCACGGTGCATACTTGAATCTGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcagCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGA
                               ttttattgttttctt  CT-rich tract
                               ttttattgttttctt  TA-rich tract