Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT

Basic information

species Arabidopsis thaliana
transcript AT1G43170.7
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 3
------gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttg---tgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
       ||    |   | |  |  |   | | |  | | |  | || |  |   | | | | ||     | ||| |||   | ||| || || | |  ||| || |||||||||||||| ||||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||||||||||  | || ||
tggcctttagccaagactttaatactaagactttagtat-tcatctgaatatgcatactactgaagagatttaaccttgtcatttttctaatgcttttcagAACTCCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAGACACCTCCTATTGTCGTTGTTGGACTTGTGGCCTATGTGAAGACTCCACGTGGCTT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 3
gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
||||||     ||  | ||   |||||   ||  ||    |||||| |    |  || ||    | |||    | | || |   | ||| |||||| ||||||||||| || || ||||||||||||||||| ||||| ||| |  | ||  |||||||| | || |||||||| ||||| ||| | ||  |
gtaagttgctctgcatcttg--cattcgtgttcatt----ggaggtat----gccttgaacatattaacaccatatgttgacaat-gtgcagAGCTCCACAAGAAGGAAACCTGCGAGGCTGTTACCATCATCGAGACCCCTCCGCTTGTCATTGTTGGACTCGTGGCCTATGTCAAGACACCTCGTGGACT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 9
gtaagtgaacttgtgtttt-tttcattctgatttgttttgtggag--gtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT-------
     |||  |||||      | ||     |      |||||  |  ||   |   ||| | | || ||  |||    || |     ||||| |  |            | | | |  ||  |    ||  |   || | |     |  | | |       | |  |  |  | |   |  |||  |  | |          
--tgttgattttgtgcagagctccacaagaaggaaacttgtgaggctgtgactatcattgagactcctccccttgtcattgtcggacttgtggaatgtgaagACCCCCCGTGGCCTACGAACCCTCAACTCTGTCTGGGCCCAACACCTTAGCGAAGAAGTGCGGAGAAGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGA

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 2
------gtaagtgaacttgtgttt-ttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgt--caactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
      | |  |  ||   || ||     |||     |    | | ||||     || |  |  |   ||||  |  || ||  |  ||  | || |  ||| || || |||||||| || ||||||||||||||||||||||| || ||| || | ||  |||||||  | || || ||||||||||||||| | ||  |
ctgtttgaatatccacaactgcttgcacccatgaatctcaagtatatggataccatttcactccattatcgtaactgctctgcctacttgat-ttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G135727_T03 (Zea mays), 3'ss of exon 3
------gtaagtgaacttgtgttt-ttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattg--ttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
      | |  |  ||   || ||     |||     |    |   ||||     || |  |  |   |||| ||||     |  |  |||  || |  ||| || || |||||||| || ||||||||||||||||||||||| || ||| || | ||  |||||||  | || || ||||||||||||||| | ||  |
ctgtttgaatatccacaactgcttgcacccatgaatctcgagtacatggataccatttcactccattatcgt-aactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 3
------gtaagtgaacttgtgttt-ttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgt--caactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
      | |  |  ||   || ||     |||     |    | | ||||     || |  |  |   ||||  |  || ||  |  ||  | || |  ||| || || |||||||| || ||||||||||||||||||||||| || ||| || | ||  |||||||  | || || ||||||||||||||| | ||  |
tctgttgaatatccacaactgcttgcacccatgaatctcgagtatatggataccatttcactccattatcgtaactgctctgcctacttgat-ttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 3
------gtaagtgaacttgtgttt-ttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattg--ttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
      | |  |  ||   || ||     |||     |    |   ||||     || |  |  |   | || ||||     |  |  |||  || |  ||| || || |||||||| || ||||||||||||||||||||||| || ||| || | ||  |||||||  | || || ||||||||||||||| | ||  |
ctgtttgaatatccacaactgcttgcacccatgaatctcaagtacatggataccatttcactccattattgt-aactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G109677_T03 (Zea mays), 3'ss of exon 5
------gtaagtgaacttgtgttt-ttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgt--caactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
      | |  |  ||   || ||     |||     |    | | ||||     || |  |  |   ||||  |  || ||  |  ||  | || |  ||| || || |||||||| || ||||||||||||||||||||||| || ||| || | ||  |||||||  | || || ||||||||||||||| | ||  |
ctgtttgaatatccacaactgcttgcacccatgaatctcgagtatatggataccatttcactccattatcgtaactgctctgcctacttgat-ttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ30452 (Selaginella moellendorffii), 3'ss of exon 2
gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
                                 ||      |  ||| || | ||||  ||   | || || | |||  |    |||   |||||| |||||||||||||| || |||||||| |||||||| ||||||||  |  |  |  | || ||||| || || ||  | ||||||||| | ||  |
---------------------------------gtaagtccgctgttcttcccatttcgagagctaaatttcgcgttcat----ttgcccagAGCTCCACAAGAAGGAGACCTGCGAGGCTGTGACCATCATCGAGACACCACCGCTCATTATCGTCGGAGTGGTGGCGTACATTAAGACTCCTCGCGGCCT

upper sequence: AT1G43170.7 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ23085 (Selaginella moellendorffii), 3'ss of exon 2
gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
                                 ||      |  ||| || | ||||  ||   | || || | |||  |    ||||  |||||| |||||||||||||| || |||||||| |||||||| ||||||||  |  |  |  | || ||||| || || ||  | ||||||||| | ||  |
---------------------------------gtaagtccgctgttcttcccatttcgagagctaaatttcgcgttcat----ttgtccagAGCTCCACAAGAAGGAGACCTGCGAGGCTGTGACCATCATCGAGACACCACCGCTCATTATCGTCGGAGTGGTGGCGTACATTAAGACTCCTCGCGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124721375|gb|EH812777.1|EH812777
EST:     CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAG
EST: gi|86027147|gb|DR322900.1|DR322900
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027140|gb|DR322893.1|DR322893
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|125322945|gb|EL337027.1|EL337027
EST:     ATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: ATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027115|gb|DR322868.1|DR322868
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|116447558|gb|EG490150.1|EG490150
EST:     CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027130|gb|DR322883.1|DR322883
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027196|gb|DR322949.1|DR322949
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027120|gb|DR322873.1|DR322873
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|124753985|gb|EH844115.1|EH844115
EST:     AGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: AGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|124951432|gb|EL026801.1|EL026801
EST:     TTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: TTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|164040699|gb|ES067291.1|ES067291
EST:     AGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: AGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027136|gb|DR322889.1|DR322889
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|47830691|gb|CK120375.1|CK120375
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|47830713|gb|CK120397.1|CK120397
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027195|gb|DR322948.1|DR322948
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|116447562|gb|EG490154.1|EG490154
EST:     CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|164234749|gb|ES027950.1|ES027950
EST:     GTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: GTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027194|gb|DR322947.1|DR322947
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027153|gb|DR322906.1|DR322906
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027192|gb|DR322945.1|DR322945
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|47831476|gb|CK121160.1|CK121160
EST:     CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027155|gb|DR322908.1|DR322908
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|116393945|gb|EG436537.1|EG436537
EST:     CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027105|gb|DR322858.1|DR322858
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027177|gb|DR322930.1|DR322930
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027178|gb|DR322931.1|DR322931
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|86027162|gb|DR322915.1|DR322915
EST:     CAAAGCTGGTATGACTCACATCGTCAGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTACTATCATTGAGACACCTG
genomic: CAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTG
EST: gi|164218195|gb|ES037139.1|ES037139
EST:     AGAGAAGTGGAGAAACCTGGATCCA                         AGCTTCACAAGAAGGAGACATGTGAGGCTGTTAC
genomic: AGAGAAGTGGAGAAACCTGGATCCAgtaagtgaac ... tgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT
                                      tttttatt  CT-rich tract
                                tttgtgtttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttgtgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA