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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaattgtttgtgattgtgttctgtgttgatgctgttttctaatttgtagtttggagataagtgacggttgaaattgtatacagGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G34320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 5
----------------------------------gtaacaat-tgtttgtgattgtg---ttctgtgttgatgctgttttctaatttgtagtttggaga----taagtgacggttgaaattg--tatacagGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAG
                                  ||| || | |   | |||||  |   || | |  |   |||  |       ||  |||||  |      || |  |    | | | |   |  |||| ||||||||||  || |||||||| || || ||||||||||| |||||||| || ||||||||||  |||||||||||||| |  ||||| | 
gtaggttatcatcgatattttcatgatcaacttagtagcattctccctttgatttggagcttattttcttcagctactaatgtgcttaaagttttcactatcttatgccatttcttatacttctttcacagAGAAGAGTTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G36210.1 (Glycine max), 3'ss of exon 5
-------------------------------gtaacaattgtttgtgattgtgttctgtgttgatgctgttttctaatttgtagtttggagataagtgacggttgaaattgtat--acagGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAG
                                ||  |    | |    |||  ||  | ||| ||  | ||     | |  |    |  |  |          |   | ||| |  |||| ||||| ||||  || |||||||| || || ||||||||||| |||||||| || ||||||||||  |||||||||||||| |  ||||| | 
gtaggttatcatggatattttcatgatcaacttagtagcattctccctttg-atttggagtttattttcttcagctactactgtgcttaaagttttcactatcttgtactgttttgacagAGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------gtaacaattgtttgtgattgtgttctgtgttgatgctgttttctaatttgtagtttggagat-aagtgacggttgaaattg-----tata-cagGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAG
                                 || || |||||  ||      || | |  || |  | ||||| ||||  || | |  |  | || ||     |  | ||      |||  |||||||||  |||  |||||||||||||| ||||| |||||||||||||| || || |||||||| |  |||||| |||| |||| |||||| | 
gtgaatactgaaacagaataattgctttgattatatcatttgttaatgggctcattttttcctggttat-ttttccaattgttattctaaaagtgaaatggtcacttcattttccaattatggcagGGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgttttctaatttgtagtttggagataagtgacggttgaaattgtatacagGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAG
        ttctaat  putative branch site (score: 2)
      ttttctaatttgta  TA-rich tract