ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG

Basic information

species	Arabidopsis thaliana
transcript	AT1G34030.1
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 3

----gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
    || | ||    | ||||     ||   |  | | |||| | ||    |    || |   |   | |  |    ||   |  | | ||| |    || |||| ||||| ||||||||||| || |||||||| |||||||| ||||| || |||||||||||||| ||  | || || |||||||| |||||||| ||||||
gtttgttacccaggcattcatcatgtattggatccctttaactt-atgttgaccatcttttacgctctcatcacccttgcgctcacttgttcct----tgtacagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTGCGTGGGCAGCACACCAAGACAACCGGAAGGAGGGGTAAGACTGTCGGTGTGTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g07719.1 (Oryza sativa), 3'ss of exon 2

------gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
       |    |   ||     ||  |   ||||| | ||  |||  | |   | |   | |   ||| |  | ||     ||   |    | ||  |||   ||| ||||| ||||||||  | || ||||||||||||||||| ||||| || ||||||||||| |||||  | || ||||||||||| ||||| || ||||||
cgaggctttggactgctaacttctttggg--ctaatta-attgcattctcagagt-tgaacaaattgctctt-tgatttcatttgaactaccttttgtaatt--cagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g07770.1 (Oryza sativa), 3'ss of exon 2

gtaaacccattagtcatttctgatcctaatcatataacatgataaat--atgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
   |   | ||    |||        | | || ||  |    | | |  || |   |||      |||||  |  | |      || || ||  |||   ||| ||||| ||||||||  | || ||||||||||||||||| ||||| || ||||||||||| |||||  | || ||||||||||| ||||| || ||||||
-cgagtactttttgtattctcacagttgaacaaattgcgctttgatttcatttgaactactacgattaattgtaatcgaaccatatctttttgtaatt--cagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 3'ss of exon 3

gtaaacccattag-tcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaa---cagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
 |    |  | || | | | |  ||   |||| || |  || ||||       ||  | |     |       || |  | | | |     |   || |   ||| ||||| ||||||||  | || ||||||||||||||||| || || || ||||||||||| |||||  | || ||||||||||| ||||| || ||||||
-tgtttctttcagcttactcccaat---aatc-tagattataataatcccaagctgaaagaaacatggcctaagttgaatcgaactactccattttgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G178341_T02 (Zea mays), 3'ss of exon 2

gtaaacccattagtca--tttctgatcctaat----catataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
 ||  |       |||  |||   ||  |  |       ||  |||  |  || |     ||| |    |||| | |      || |||| |||||    ||  ||| ||||| ||||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||  |  | ||||| ||||||||||| || ||||||
-tagccgtggccttcaaattttaaatttttgtatgctgcatgtcattgtttatgtagttcctaag----ttaacagtcacatattcgcatcttcttggtttg--cagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G130544_T02 (Zea mays), 3'ss of exon 3

gtaaacccattagtcatt-tctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggtttt--gcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
      |||||   || | |||   |   |   | |  |||    ||||  |  |||        || ||     |   ||  |  ||||  |    |   ||| ||||| ||||||||| | || |||||||| ||||| || ||||| || ||||||||||| |||||| |  | |||||||| |||||||| || ||||||
----gtccattgtgcactgtctacactctacattcttgcatcgagaatacatgatcttattatcgtagtagcccagaccttcagatttttaatttgttctgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGCGTCCGTGGCCAGCACACCAAGACTACTGGTAGGCGTGGAAAGACCGTTGGTGTCTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G36610.2 (Glycine max), 3'ss of exon 3

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaa-taatgg--tggttttgcattttcttacaatga-acagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
 |         | || ||  ||  |  || |||     |||   | | | |  |  |    | ||   ||| |   ||   ||| ||   ||||| || |  ||||||||| |||||| |||| ||||||||||| || ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||||| |||||||||
-ttgttaataaaatccttgttgccctcaagcattgtgtatgc--attgtttgattgaaaaacattggctaacgaactgaaattgtatc--cttactattatgcagAAACCACCGTGGTTTGAGGCATTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGTAGGGGAAAGACTGTTGGTGTCTCTAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G30730.1 (Glycine max), 3'ss of exon 3

----gtaaacccattagtcatttctgatcctaatcatataacatgata--aatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
     |    || ||  ||  |   || | | ||  ||||   || |   |    ||     | | | ||  ||  |  | | |||  ||| |   |       ||| |||||||| ||| ||||||| ||||||||||| ||||| ||||| || || |||||||| |||||||| || || || |||||||||||||||||||||
tcctctgcttccgttcatc--tatggaccttgattttatattctgttgtcagagagtaaaacatgagattgcatccttattgatttttattcttgcatg-----cagGAACCATCGAGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCTAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G30970.1 (Glycine max), 3'ss of exon 3

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatg-gtggttttgcattttcttacaatga-acagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
 ||||    |   |    || |||  |  |  |    |||  |     ||      |     ||   ||||| |  |     ||| | | ||| || |  ||||||||| |||||| |||| || |||||||| || ||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||| || |||||||||
-taaaattctggttgtcctcagatttttgt-gtg-ggcattgtctgcctgattaaaaaaatattggctaatgagctgaaaatcatatccctactattatgcagAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGCAGGGGAAAGACTGTTGGGGTCTCTAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G08690.1 (Glycine max), 3'ss of exon 3

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctt---taataatggtggttttgcattttcttacaatga-acagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
    |     | |  | |||| |      ||   |       |   || ||  |  |     ||   ||||||   |    |    | ||||||| || |  |||||| || |||||| |||| || ||||||||||| ||||||||||| || ||||| ||||| ||||||||||| || || ||||||||||| |||||||||
----atttcct-gctacttcttaatagggtctctttgtgcccttgttaagttgtgcatattattaggtaataacactaacatcttgtattcttactattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCACACTAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3

------gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
       |     ||| |     |   ||     ||   |  |||||  |||| |    ||||     |  ||| |   || | ||   | | ||| ||     ||| |||||||||||| ||||||| ||||||||||| ||||| ||||| || || |||||||| |||||||| || || || |||||||||||||| ||||||
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaat-tactttctattaaatccaatgaaattgatatt---tatacttgcat---gcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G24710.1 (Glycine max), 3'ss of exon 3

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGT--CTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG------
                                                           |  | |    |   |  ||| | |  |    |||   |  |  |       |  |   |    ||| | ||||  ||||| |||||||| || ||||| ||||| ||||||||| | |  || ||||||||||| |||||||||      
-----------------------------------------------------------gtttgtttagaaaattatttaggaaatatcaacagaaatgaccatgtgatttcctgctacttcttaatagGGTCACTCCGCGTTCGTGGTCAGCACACTAAGACTACTGGTCGCCGGGATAAAACTGTTGGTGTTTCTAAGAAGCATTAA

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0072g00060.t01 (Vitis vinifera), 3'ss of exon 4

gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgc---attttcttacaatga-acagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
   |   ||   ||      || |  |  |  ||     |||   |  | |   ||||| |    || | || |  |||      || ||  |||  | |  ||| ||||| ||||||||||| || |||||||| ||||||||||| || || ||||||||||| || ||||| |||||||||||||||||||| |||||||||
---agggcacc-gtgtccattgtttgtggtagtaggttgtgaatgaagtttaggctaggtggggaaaca-tgatactttcagctaatcttgatactgttatgcagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTTCGCGGCCAGCACACCAAGACCACAGGTCGTAGAGGAAAGACTGTTGGTGTCTCTAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S14_433V6.1 (Physcomitrella patens), 3'ss of exon 3

---------gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
           |||   |||||  |||| |   | |   |  || |     ||  |  |  |  |   ||  ||| |   | ||      | | || | |  |||  ||| ||||| ||||||||  | || ||||||||  | ||||| ||||| ||||||||||||||||||||  |  | || |  || || || ||||| ||||||
tcatggatatgaaatgtattagatatttttaggctt---cgcatcatgcagtatgtgagggcgattatggtcttattggagatgc-----cgtcttgtgatcatg--cagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACACACCAAGACAACTGGAAGACGTGGTAGAACCGTCGGAGTGTCCAAGAAG

upper sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3

--gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttg-cattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG
   |   |   |  |    || |  || ||  ||| |    |  |   ||  | || ||    || ||||  || ||   |         ||||   ||  ||| ||||| ||||||||  | || ||||||||  | ||||| |||||||| ||||||||||||||||| ||  | |||  ||| ||||||||||||||||||
tttttttcttgtatggatctttttttcgtacacat-tcttttcttttgtagattct-taattactctaatgttgctgaaatcaatggccgcttatgttg--cagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|125158225|gb|EL186922.1|EL186922

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACGTGGGGTCT
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTAC-TGGGGTCT

EST: gi|86081873|gb|DR377632.1|DR377632

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|125308848|gb|EL322933.1|EL322933

EST:     ATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: ATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|124904709|gb|EH978789.1|EH978789

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGT
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGT

EST: gi|164182253|gb|ES095960.1|ES095960

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGG
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGG

EST: gi|164171812|gb|ES013067.1|ES013067

EST:     GAAGCTCAGGGATGATCTTGAGCGTCTCAAG-AAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|164226845|gb|EL989771.1|EL989771

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTC
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTC

EST: gi|86081156|gb|DR376913.1|DR376913

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|86078529|gb|DR374286.1|DR374286

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|164209695|gb|ES013196.1|ES013196

EST:     TGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: TGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|164180136|gb|ES068788.1|ES068788

EST:     GGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|164082128|gb|ES151291.1|ES151291

EST:     CTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: CTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|47827960|gb|CK117644.1|CK117644

EST:     GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

EST: gi|125187418|gb|EL202372.1|EL202372

EST:     GCCCTTGACATGAAGCTCCGGGATGATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGA
genomic: GCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGA

EST: gi|124777726|gb|EH867669.1|EH867669

EST:     GATCTTGAGCGTCTCAAGAAAATCAG                         AAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGGCAACA
genomic: GATCTTGAGCGTCTCAAGAAAATCAGgtaaacccat ... caatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACA

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG

                                       ttcttac  putative branch site (score: 2)
                                     ttttcttac  CT-rich tract
                tttaataat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns