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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcagATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTTTTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTC

Basic information

species Arabidopsis thaliana
transcript AT1G34020.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G36620.1 (Glycine max), 3'ss of exon 2
-------gtattagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcagATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTTTTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTC
       |||||  |  |   |||    |  ||    |   |  |||| ||| | ||  |||  ||| || | ||     ||| |||||||||||| | || ||||| |||||||| ||  |||||||| |  ||||||| || ||||| ||||| ||||||||||| || ||||||||  | || |
gtgagttgtattgaattttcactattggtccaag---gtccattaatgcatt-cagaagtta-aattttcttcttaaccattggcagATTGCTAAGTTGAGTATGATCCCTGTATCCTGCCTGTTGGAAGTTTTTTTCGACAACATTCGGTATTCAAGAGATACAAAACTGAGCATAGGTGTTGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcagATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTTTTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTC
                   tgctgat  putative branch site (score: 3)
                                    tcctgtttttgctt  putative PPT
      aaaagaaatgtatt  TA-rich tract