Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcaagaatcgaatgctagtttgcgtttaacctttagaaaaatgttttcttttcacatatagattcaaacattggtctttggtacattttgagtcatttagaagagtttgatcttatcttgattttatggtattcttcgatcgatcagGTCTTCGTAGCCGCGATCACTAAACGAAAACAGATTTGCCCATCAAACCCAAACATGGTTCACCAACCTTCAACGGATCTTGTTCGTGTCAAACCTCTCC

Basic information

species Arabidopsis thaliana
transcript AT1G33440.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttagaagagtttgatcttatcttgattttatggtattcttcgatcgatcagGTCTTCGTAGCCGCGATCACTAAACGAAAACAGATTTGCCCATCAAACCCAAACATGGTTCACCAACCTTCAACGGATCTTGTTCGTGTCAAACCTCTCC
                       tcttgat  putative branch site (score: 4)
                                       ttcttcg  putative PPT
                    ttatcttgattttat  TA-rich tract