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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttcttattatgttctttgattaggacattctcttatgtttctggatcagttgagtaatgttttttcttgatttatttgttagGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTC

Basic information

species Arabidopsis thaliana
transcript AT1G31970.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164015338|gb|ES211125.1|ES211125
EST:     ATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTT                         GATATTGTCATTGGTACGCCTGGTCGTT-GAGAGACTTGATTGAGTCT
genomic: ATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTTgtaagatttc ... tatttgttagGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTGAGTCT
EST: gi|164133075|gb|ES083760.1|ES083760
EST:     GGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTT                         GATATTGTCATTGGTACGCCTGGTCGT
genomic: GGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTTgtaagatttc ... tatttgttagGATATTGTCATTGGTACGCCTGGTCGT
EST: gi|86064827|gb|DR360584.1|DR360584
EST:     ATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTT                         GATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACCTTGATTGAGTCTAA
genomic: ATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTTgtaagatttc ... tatttgttagGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGAC-TTGATTGAGTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttatgtttctggatcagttgagtaatgttttttcttgatttatttgttagGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTC
                                     tcttgat  putative branch site (score: 4)
                                ttttttcttgattt  CT-rich tract
                           taatgttttttcttga  TA-rich tract