Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgtatattatccactcagatgctgattaactaattgaccacccaagttgttatgtctgatattggttgatttgttcagGCACACAGCTTCTGTTGCAGCTGGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATGGCTCCTCGTGCTCA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G30600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G30600.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G09850.1 (Glycine max), 3'ss of exon 3
----------gtaagtgtatattatccactcagatgctgattaacta-attgaccaccc--------aagttgttatgtctgatattggttgatttgttcagGCACACAGCTTCTGTTGCAGCTGGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATGGCTCCTCGTGCTCA
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atattggactgttaccaaatttgttttaatcataacataattagttatgtttacttctcttttaactaaattcccat-tctgatgt-aactaacatacacagGCACACAGCATCTGTTGCAGCAGGAAACCATGGGATTCCAGTGATTGTTGCTGGACATCACTTTGGGAATGCTAGCGGGATGGCTCCTCGTTCACA
upper sequence: AT1G30600.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G21920.1 (Glycine max), 3'ss of exon 3
---------------gtaagtgtatattatccactcagatgctgatta-----actaattgaccacccaagttgttatgtctgatattggttgatttgttcagGCACACAGCTTCTGTTGCAGCTGGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATGGCTCCTCGTGCTCA
|| | | ||| ||| || | | | ||| ||| | | | || | | | |||||| | | | | |||||| ||||| ||||||||||| || || || ||||| || ||| | ||||| || |||| | |||| |||||||| ||||||||||||||| | ||
cctattggaccatcaccaaatttgatttaatcacacata-gttagttatctttacttctcttttaactaaatgcctgt-tctgatgt-aactaaaatacacagGCATACAGCATCTGTTGCAGCAGGAAACCATGGGATTCCAGTGATTGTTGCTGGACATCACTTTGGGAATGCTAGTGGGATGGCTCCTCGTTCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattaactaattgaccacccaagttgttatgtctgatattggttgatttgttcagGCACACAGCTTCTGTTGCAGCTGGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATGGCTCCTCGTGCTCA
tttgttc CT-rich tract
actaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgtatattatccactcagatgctgattaactaattgaccacccaagttgttatgtctgatattggttgatttgttcagGCACACAGCTTCTGTTGCAGCTGGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATGGCTCCTCGTGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC