Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttaaacttccatgctcatattcaatataagtgtcatgatgatgccttttttttgtcaaaaatacaaagtgtgaccaatcttctcgtatgaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGATGTTGGCCATTAC

Basic information

species Arabidopsis thaliana
transcript AT1G30120.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30120.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0043g00720.t01 (Vitis vinifera), 3'ss of exon 3
---ctttaaacttccatgctcatattcaatataagtgtcatgatgatgccttttttttgtcaaaaatacaaagtgtgaccaatct--tctcgtatgaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGATGTTGGCCATTAC
    ||   | |  | || ||  |||||  ||   |||  | ||||      ||   | |    |||  |   | |    ||  |  | |  | |   |   ||| ||||| ||  | || || || || ||||  ||||| ||||||||||| ||||| |||||||| |  ||||| || ||||||||||| || ||||| || 
attattactattctcttgttcgcattcataattgttgttcttatgac-----ttcaatattgctaattgaggatttagtaaacttaatttgatttctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATGGATAGAGATCCCCGAGTATGCGTAATGGGTGAAGACGTGGGCCACTAT

upper sequence: AT1G30120.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv10s0003g03770.t01 (Vitis vinifera), 3'ss of exon 4
ctttaaacttccatgctcatattcaatataagtgtcatgatgatgccttttttttgtca----aaaatacaaagtgtgaccaatcttctcgtatgaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGATGTTGGCCATTAC
     |   |   |  |  | |||| |      | ||      || ||||  |  |  |    |||| |   ||||   | | | | ||  | |   |   ||| ||||| ||  | || || || || ||||  ||||| ||||||||||| |||||||||||||| |  ||||| || |||||||||||||| ||||| || 
----gagtctaattcttttttttcattgattaggccaattcattggctttcatcagaaatctcaaaacaagtagtgatgctattttcctgatttctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATGGACAGAGATCCCCTAGTATGCGTAATGGGTGAAGATGTGGGCCACTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046243|gb|DR341998.1|DR341998
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA-GAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046288|gb|DR342043.1|DR342043
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046257|gb|DR342012.1|DR342012
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046264|gb|DR342019.1|DR342019
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046249|gb|DR342004.1|DR342004
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCCTTCAGGAAGGTCTGGAAGAAGAGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTC-TTCAGGAAGGTCTGGAAGAAGAGA
EST: gi|86046246|gb|DR342001.1|DR342001
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046259|gb|DR342014.1|DR342014
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046232|gb|DR341987.1|DR341987
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046280|gb|DR342035.1|DR342035
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046255|gb|DR342010.1|DR342010
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046294|gb|DR342049.1|DR342049
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046283|gb|DR342038.1|DR342038
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046254|gb|DR342009.1|DR342009
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046244|gb|DR341999.1|DR341999
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046252|gb|DR342007.1|DR342007
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046284|gb|DR342039.1|DR342039
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046261|gb|DR342016.1|DR342016
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046289|gb|DR342044.1|DR342044
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|124866461|gb|EH950898.1|EH950898
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA
EST: gi|86046296|gb|DR342051.1|DR342051
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046269|gb|DR342024.1|DR342024
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046273|gb|DR342028.1|DR342028
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGG
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGG
EST: gi|86046272|gb|DR342027.1|DR342027
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046229|gb|DR341984.1|DR341984
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA-GAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046275|gb|DR342030.1|DR342030
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046233|gb|DR341988.1|DR341988
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046248|gb|DR342003.1|DR342003
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046256|gb|DR342011.1|DR342011
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046236|gb|DR341991.1|DR341991
EST:     ACGAAGGAGGCGGGTACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046253|gb|DR342008.1|DR342008
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046271|gb|DR342026.1|DR342026
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046274|gb|DR342029.1|DR342029
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCCTTCAGGAANGTCTGGAAGAAGAGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTC-TTCAGGAAGGTCTGGAAGAAGAGA
EST: gi|86046282|gb|DR342037.1|DR342037
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046287|gb|DR342042.1|DR342042
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046279|gb|DR342034.1|DR342034
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTSGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|125284230|gb|EL298315.1|EL298315
EST:     CGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGA
genomic: CGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGA
EST: gi|86046251|gb|DR342006.1|DR342006
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGA
EST: gi|86046270|gb|DR342025.1|DR342025
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046240|gb|DR341995.1|DR341995
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|47830958|gb|CK120642.1|CK120642
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046285|gb|DR342040.1|DR342040
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046247|gb|DR342002.1|DR342002
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCCTTCAGGAAGGTCTGGAAGAAGAGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTC-TTCAGGAAGGTCTGGAAGAAGAGA
EST: gi|86046290|gb|DR342045.1|DR342045
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046276|gb|DR342031.1|DR342031
EST:     ACGA-GGAGGCGGATACGTCTGCGMGCACTGG                         ACATGAACTATTGSTTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGA
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTT-CGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGA
EST: gi|86046258|gb|DR342013.1|DR342013
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046241|gb|DR341996.1|DR341996
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046277|gb|DR342032.1|DR342032
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046250|gb|DR342005.1|DR342005
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046234|gb|DR341989.1|DR341989
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046267|gb|DR342022.1|DR342022
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046245|gb|DR342000.1|DR342000
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046268|gb|DR342023.1|DR342023
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046228|gb|DR341983.1|DR341983
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046295|gb|DR342050.1|DR342050
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046230|gb|DR341985.1|DR341985
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046281|gb|DR342036.1|DR342036
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046238|gb|DR341993.1|DR341993
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046266|gb|DR342021.1|DR342021
EST:     ACGAAGGANGCGGATACGTCTGCGAGCACTGG                         G
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacag-
EST: gi|86046266|gb|DR342021.1|DR342021
EST:     ACGAAGGANGCGGATACGTCTGCGAGCACTGG                         G
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacag-
EST: gi|86046265|gb|DR342020.1|DR342020
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|86046286|gb|DR342041.1|DR342041
EST:     ACGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
genomic: ACGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGAT
EST: gi|125312613|gb|EL326698.1|EL326698
EST:     CGAAGGAGGCGGATACGTCTGCGAGCACTGG                         ACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAAGAAGAGA
genomic: CGAAGGAGGCGGATACGTCTGCGAGCACTGGgtttgttttg ... gaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAA-GAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttttttgtcaaaaatacaaagtgtgaccaatcttctcgtatgaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGATGTTGGCCATTAC
     tttttgtcaaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttaaacttccatgctcatattcaatataagtgtcatgatgatgccttttttttgtcaaaaatacaaagtgtgaccaatcttctcgtatgaatttacagACATGAACTATTGCTTTTCGAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGATGTTGGCCATTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaatc