1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgattctgtcgtttaacgagagaaagctgaaagcatacatcttgtgacttgaaactcgttccagttgctaattaaagtttttgttgtctatggtcccagGTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCTGGTTACGTT
species | Arabidopsis thaliana |
transcript | AT1G29970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGATAGAGCATGAACTTCCTTGTTGTGGCTTGGGCATGGGCTGGTTTCT GTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTCCCTNNGGTGCTT
genomic: ATGATAGAGCATGAACTTCCTTGTTGTGGCTTGGGCATGGGCTGGTTTCTgtaagttcct ... atggtcccagGTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTACCTC-GGTGCTT
tgacttgaaactcgttccagttgctaattaaagtttttgttgtctatggtcccagGTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCTGGTTACGTT
tgctaat putative branch site (score: 2)
taattaaagtttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgattctgtcgtttaacgagagaaagctgaaagcatacatcttgtgacttgaaactcgttccagttgctaattaaagtttttgttgtctatggtcccagGTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCTGGTTACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - -aacgaga
- - - - - - - - - - - - - - -gaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg