1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaaacatctctcattttgttacttagtcttggacaacatctcttgagtcagctttatctaccatgttttcacaatcattcgttccttttttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAATGGGTGATACAAATGAAGATTGCTACATA
species | Arabidopsis thaliana |
transcript | AT1G29040.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATA TGGGAAGATTGTGAATGTAGAGGTGGTGGAEST: gi|124883602|gb|EH962504.1|EH962504
genomic: TCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAgtaagttcct ... ttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGA
EST: TTTGGACAAGGTTAAGTCTATCTTCCCATA TGGGAAGATTGTGAATGTAGAGATGGTGGATGGAGGACTGATTTGCTCAAGEST: gi|86076220|gb|DR371977.1|DR371977
genomic: TTTGGACAAGGTTAAGTCTATCTTCCCATAgtaagttcct ... ttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAG
EST: TCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATA TGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAG
genomic: TCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAgtaagttcct ... ttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAG
gagtcagctttatctaccatgttttcacaatcattcgttccttttttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAATGGGTGATACAAATGAAGATTGCTACATA
tcattcgttccttttt CT-rich tract
ttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaacatctctcattttgttacttagtcttggacaacatctcttgagtcagctttatctaccatgttttcacaatcattcgttccttttttgtttgaagTGGGAAGATTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAATGGGTGATACAAATGAAGATTGCTACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA