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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatttttttcttgaattcttgttttgttagtcttaagaacgagtgaaaacagatttctagctatctgctgatttgtttgtcagagtttataatgagtttgttccattgggacttaatgttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTATACAAAACATCAAACAAGG

Basic information

species Arabidopsis thaliana
transcript AT1G28600.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125153581|gb|EL184656.1|EL184656
EST:     TTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG                         GAGTTGATTGGTATGGGGG-TAAAACCTTTCTAGTGCCCGGAGAGTT
genomic: TTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTT
EST: gi|125086995|gb|EL146283.1|EL146283
EST:     TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG                         GAGTTGATTGGTAT-GGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
genomic: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
EST: gi|125221139|gb|EL235224.1|EL235224
EST:     TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG                         GAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
genomic: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtcagagtttataatgagtttgttccattgggacttaatgttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTATACAAAACATCAAACAAGG
                                     acttaat  putative branch site (score: 4)
            tttataatgagttt  TA-rich tract