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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaagcatctcctgatgcgtgttgctattgattgtcttcttcaaactgcttaaccattgttgtgtgttgtgggattgtcagATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAGCCCCGCTGGTGTCTTTGATGAG

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043029|gb|DR338784.1|DR338784
EST:     ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGG                         ATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAGCCCCGCTGG
genomic: ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGGgtataaaagc ... ggattgtcagATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAGCCCCGCTGG
EST: gi|86043031|gb|DR338786.1|DR338786
EST:     ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGG                         ATACACTCTTGGCGGTTTCTTCCTTGCTA
genomic: ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGGgtataaaagc ... ggattgtcagATACACTCTTGGCGGTTTCTTCCTTGCTA
EST: gi|86043027|gb|DR338782.1|DR338782
EST:     ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGG                         ATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAG
genomic: ACTGCTCGAGCATTCATCCCCAAGGAGTTTCGACTAGTTGAAGCTTTTGGgtataaaagc ... ggattgtcagATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgattgtcttcttcaaactgcttaaccattgttgtgtgttgtgggattgtcagATACACTCTTGGCGGTTTCTTCCTTGCTAGCTACGATGATAGCCCCGCTGGTGTCTTTGATGAG
                     gcttaac  putative branch site (score: 3)