1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgattgtctgccaaacacaagttactttatcctgttttatgcagtgtgttggtagttcacatccgcaaacaggaaacaaaccctcaatttcattgcattagcttccggattctgaaaaactccttaggacatactcttctacaaaagattcaagtataatttccttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTCCGCACAATGTTTCAGGAAGTCGTTGCAGTGACAGGTGATGGAACAAATG
species | Arabidopsis thaliana |
transcript | AT1G27770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGGGAGAAAAGTGATGAGGAACTGCTCAAGCTAATCCCAAAATTGCAG GTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTCEST: gi|116441411|gb|EG484003.1|EG484003
genomic: TCCGGGAGAAAAGTGATGAGGAACTGCTCAAGCTAATCCCAAAATTGCAGgtgattgtct ... cttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTC
EST: GAGGAACTGCTCAAGCTAATCCCAAAATTGCAG GTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTCEST: gi|86059592|gb|DR355349.1|DR355349
genomic: GAGGAACTGCTCAAGCTAATCCCAAAATTGCAGgtgattgtct ... cttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTC
EST: TCCGGGAGAAAAGTGATGAGGAACTGCTCAAGCTAATCCCAAAATTGCAG GTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTC
genomic: TCCGGGAGAAAAGTGATGAGGAACTGCTCAAGCTAATCCCAAAATTGCAGgtgattgtct ... cttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTC
actccttaggacatactcttctacaaaagattcaagtataatttccttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTCCGCACAATGTTTCAGGAAGTCGTTGCAGTGACAGGTGATGGAACAAATG
tttccttcttgc CT-rich tract
attcaagtataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgtctgccaaacacaagttactttatcctgttttatgcagtgtgttggtagttcacatccgcaaacaggaaacaaaccctcaatttcattgcattagcttccggattctgaaaaactccttaggacatactcttctacaaaagattcaagtataatttccttcttgcagGTGATGGCACGATCCTCGCCCATGGATAAGCATACTTTGGTGAGACTCCTCCGCACAATGTTTCAGGAAGTCGTTGCAGTGACAGGTGATGGAACAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA