1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtaaataatcacactgaacagtattgttgtcattctagtttcattgttgatgatttggatgtgtctaattgtgtttttgaattgaatttgtatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCA
species | Arabidopsis thaliana |
transcript | AT1G27400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG AACACTAGAGAAACAGCGCACGCCEST: gi|47827860|gb|CK117544.1|CK117544
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACGCC
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG AACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCEST: gi|124823160|gb|EH908026.1|EH908026
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCC
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG AACACTAGAGAAACAGCGCACGEST: gi|86074318|gb|DR370075.1|DR370075
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACG
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG WACACTAGAGAAACWGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCEST: gi|163982884|gb|ES002582.1|ES002582
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCC
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG AACACTAGAGAAACAGCGCACGCEST: gi|116444090|gb|EG486682.1|EG486682
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACGC
EST: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG AACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCC
genomic: CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAGgtaaatttct ... tatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCC
gttgatgatttggatgtgtctaattgtgtttttgaattgaatttgtatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCA
gtctaat putative branch site (score: 3)
tttttgaattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataatcacactgaacagtattgttgtcattctagtttcattgttgatgatttggatgtgtctaattgtgtttttgaattgaatttgtatgaaacagAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGAACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - aatcaca
- - - - - - - - aacagta
- - - - - - - - - - - - - - - - - - - - - - - - - -gatttgg