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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatcatcactcttcttatatatttttctactgctcttagcaattttccatcaaatgtttagtgtctcatatgggttcttcgtctttcagACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCCATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGC

Basic information

species Arabidopsis thaliana
transcript AT1G26810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G12030.1 (Glycine max), 3'ss of exon 2
gtaatatcatcactcttcttatatatttttctactgctcttagcaattttccatcaaatgtttagtgtctcatatgggttcttcgtctttcagACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCCATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGC
|||   || |      | |||| |||||  |         | | |   ||  ||    | ||  ||        |    |  |  | | ||||||  |||| || ||||| || |||||||||   ||  |||| ||| | |  |||||||||||||||||||| |||||||||||||||||||| |||||||
gtacattctttttctcttttatttatttaacattgaaatattggatacttttatgttttattatgttgactgactcaactggttatatgtcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCCATTCTTGCCAGTGGTTTGCCCACATCAGAAGATTCAGAGC

upper sequence: AT1G26810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G05860.1 (Glycine max), 3'ss of exon 3
gta-atatcatcactcttcttatatatttttctactgct----cttagcaattttccatcaaatgtttagtgtctcatatgggttcttcgtctttcagACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCCATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGC
||| ||    |  ||||| ||    |||| | ||    |      | | |   ||  ||    | || |||        |    |  |  | | ||||||  |||| || ||||| || |||||||||   ||  |||| ||| | |  |||||||| ||||||||||| ||||||||||||||||| || |||||||
gtacattctttttctcttgtttctgatttatttaacattgaaatattgaacacttttatgttttattaagttgactgactcaactggttatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTTTGCCCACATCAGAGGATTCAGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagcaattttccatcaaatgtttagtgtctcatatgggttcttcgtctttcagACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCCATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGC
                                        ttcttcgtctttc  CT-rich tract
                 aaatgttta  TA-rich tract