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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacatctacaagtttcagttttcggttagatatatttcgatagatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT

Basic information

species Arabidopsis thaliana
transcript AT1G26550.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
gacatctacaagtttca-gttttcggttagat-atatttcgatagatgtgtgttatgaattgtggaga-atcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
  ||  |||| ||| |  | | || ||  | | |   | |  |          ||   | | || | | |||  |     |||  | | | ||   |   ||||| ||   ||| |||||||| |||||||| || || ||||| |||||||||||||||||||| || ||||| ||||| || || || || ||||| || |
-ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgat--actgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT

upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G048277_T03 (Zea mays), 3'ss of exon 2
-----gac-atctacaagtttcagttttcggttagatatatttcg--atagatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
     ||| | ||||    |  |  |||   | | || | ||  |  ||   |   |   |||| |  |     ||| | ||   |||| | |||      |   ||| | |||  |||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| ||||| || || || |
aatctgactaactacttcgtcgaagtttttctcatattttttgtgccattattagataccatga-tgataatagatcctgactttattttt-tgt------actacagGTAGCACAAGAGTATTCTGAATGCCCATCAGGGAAGAAAGGTGGAGATCTTGGTTGGTTCCCGCGTGGCAAGATGGCTGGTCCTTTCCAGGAGGTTGCTT

upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G21080.1 (Glycine max), 3'ss of exon 3
------gacatctacaagtttcagttttcggttagatatatttcgata-gatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
         ||  | |||  || |||  |  | | ||  |  | || |  |  | | || |  | | |||  | | | || |  ||||   ||    ||  || ||| | |||  |||||| || || ||||||||||| || || || ||||| ||||||||||| || |||||||||||||| || ||||| || || || ||||
ttgaaaaggataaataagaatctgttcact-tgaaattaacctagagacaaaatattttgtccaat-tggttattatcaatagtatttcactg----act-tcacagGTAGCACAAGAGTATTCAGAATGTCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGAAGTTGCCT

upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G33180.2 (Glycine max), 3'ss of exon 3
-----gacatctacaagtttcagttttcggttagatatatttcg--atagatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
        ||  | |||  || | ||    | | ||  || | |  | | |  | | ||   ||||        | ||| ||  |  | |     ||    || ||||| ||   |||||| || || ||||| ||||| || || || ||||| ||||||||||| || |||||||||||||| || ||||| || ||||| ||||
ttgaaaggataaataagaatctggttcatttgaaatcaatctagagacaaacatttttttccaattt-----gttgttatcaataacttttcactgact--tcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCT

upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv17s0000g06430.t01 (Vitis vinifera), 3'ss of exon 3
-----gacatctacaagtttcagttttcggttagatatatttcgatagatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
      |||||| ||  |        |   | | |   |  | || |  | | |  |  || ||   | ||   |||      ||  | | |       |||||| | |||||||| || || || |||||||||||||| || || || || ||||||||||| || || || |||||||| |||||||| || ||||| ||||
ctgcatacatctccatctcatcacactaactgaaaagaagatagaaaattctcttcttggagttcctgtgataattatttttcttcctttatt-----ttctcagCTAGCAGCAGAATATTCAGAATGTCCATCAGGGAAGAAGGGTGGTGACCTTGGATGGTTTCCGCGTGGCAAGATGGCTGGTCCATTTCAGGATGTTGCCT

upper sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S217_91V6.1 (Physcomitrella patens), 3'ss of exon 3
gacatctacaagtttcagttttcg-gttagatatatttcgatagatgtgtgttatgaattgtggagaatct--taacacg-atttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
   | |   || | |        | |||  ||| |||||   |   |  ||   |     |||||| || |  |||   | | ||  || | | ||     ||| | || ||||| ||||| || ||||||||||| || ||||||||||| || || ||||| ||||| || |||||||| || || ||||| || || ||||
---accataaaatattgccacgagcgttgcataaatttctgcat-cgaatggcgttttcagtggagcatttcataatttgtagtttggttttgtactcatgcagCTAGCGGCAGAATACTCAGAATGTCCATCAGGCAAGAAAGGAGGAGACCTCGGGTGGTTTCCTCGTGGCAAGATGGCTGGACCTTTCCAGGAGGTGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025350|gb|DR321103.1|DR321103
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025343|gb|DR321096.1|DR321096
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025368|gb|DR321121.1|DR321121
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025366|gb|DR321119.1|DR321119
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025354|gb|DR321107.1|DR321107
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGARTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGGAAAAAAGGAGGAGATCT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGG-AAAAAAGGAGGAGATCT
EST: gi|86025338|gb|DR321091.1|DR321091
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025345|gb|DR321098.1|DR321098
EST:     ATGGTTGGTTGAGCAACGGAGA-AAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACKCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|164205463|gb|ES114524.1|ES114524
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAG
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAG
EST: gi|86025358|gb|DR321111.1|DR321111
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025346|gb|DR321099.1|DR321099
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGANTACTCTGAGTATCCATCAGGGAAAANAKGGAGGAGATCT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAA-GGAGGAGATCT
EST: gi|86025370|gb|DR321123.1|DR321123
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025355|gb|DR321108.1|DR321108
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025367|gb|DR321120.1|DR321120
EST:     ATGGTTGGTTGGGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025333|gb|DR321086.1|DR321086
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025360|gb|DR321113.1|DR321113
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025347|gb|DR321100.1|DR321100
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025339|gb|DR321092.1|DR321092
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025342|gb|DR321095.1|DR321095
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAA                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025356|gb|DR321109.1|DR321109
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|164212122|gb|ES152560.1|ES152560
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCGGGGAAAAAAGGAGG
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGG
EST: gi|86025344|gb|DR321097.1|DR321097
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025369|gb|DR321122.1|DR321122
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|164222001|gb|ES164227.1|ES164227
EST:     ACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGNGGAGATCTT
genomic: ACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025361|gb|DR321114.1|DR321114
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|164048615|gb|ES153437.1|ES153437
EST:     TGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGACAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCGGGGAAAAAAGGAGG
genomic: TGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTG-CAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGG
EST: gi|86025341|gb|DR321094.1|DR321094
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025335|gb|DR321088.1|DR321088
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAWAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025362|gb|DR321115.1|DR321115
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTATCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025372|gb|DR321125.1|DR321125
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTATCCATCAGGGAAAARAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025349|gb|DR321102.1|DR321102
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025365|gb|DR321118.1|DR321118
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAASGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025353|gb|DR321106.1|DR321106
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTATCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025331|gb|DR321084.1|DR321084
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025371|gb|DR321124.1|DR321124
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025364|gb|DR321117.1|DR321117
EST:     CTGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: -TGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025348|gb|DR321101.1|DR321101
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|125187652|gb|EL202606.1|EL202606
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACT
EST: gi|86025357|gb|DR321110.1|DR321110
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025340|gb|DR321093.1|DR321093
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|125319987|gb|EL334072.1|EL334072
EST:     CAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCNTCAAGGGAAAAAAGGAGGAGATCT
genomic: CAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCA-GGGAAAAAAGGAGGAGATCT
EST: gi|86025334|gb|DR321087.1|DR321087
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT
EST: gi|86025332|gb|DR321085.1|DR321085
EST:     ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAG                         ATTGCAGCAGAGTACTCTGAGTATCCATCAGGGAAAAAAGGAGGAGATCTT
genomic: ATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGgtgaatatcc ... acgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT
                      tcttaac  putative branch site (score: 2)
     ttatgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gacatctacaagtttcagttttcggttagatatatttcgatagatgtgtgttatgaattgtggagaatcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacga