1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attactttggtttctttctctcaattcatatatactcttcttctgcaacttaacgcgtagaaattttcaaagcctcaccactttactggcttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAATGTGTGAGGTTCTTGGTGG
species | Arabidopsis thaliana |
transcript | AT1G26160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAG CTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAEST: gi|86043955|gb|DR339710.1|DR339710
genomic: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGgtaaataaac ... ttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGA
EST: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAG CTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAEST: gi|86043958|gb|DR339713.1|DR339713
genomic: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGgtaaataaac ... ttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGA
EST: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAG CTATTGTTGGAGATATTACCCCATCTGATGKTGTGCCTAAGGAAGAAAAGA
genomic: GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGgtaaataaac ... ttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGA
caacttaacgcgtagaaattttcaaagcctcaccactttactggcttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAATGTGTGAGGTTCTTGGTGG
gcctcac putative branch site (score: 3)
cttcc putative PPT
tagaaattttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactttggtttctttctctcaattcatatatactcttcttctgcaacttaacgcgtagaaattttcaaagcctcaccactttactggcttccgaatagCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAATGTGTGAGGTTCTTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - - - cttcttc
- - - - - - - - - - - - - - - - - - - - - - - -acttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa