Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggcaatacaggtttcttctttctgttttcagtcatcaaagaagttccaaaaattatttgatctcacttaaattgactatttttagGTGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCACAGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTT

Basic information

species Arabidopsis thaliana
transcript AT1G25580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25580.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
--------gtcaggcaatacaggtttcttctttctgttttcagtcatcaaagaagttccaaaaattatttgatctcacttaaattgactattttta----gGTGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCACAGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTT
        |||   |  |||   | | | ||   | | || |   |||||| ||     ||||| |      | |   ||   ||  || ||||||    ||||| |||   ||||| |  |   ||||||| || ||| |||||||||| |||||||  || ||||||||||||||| ||||||| || |  |||| |||
cttttggtgtccctctttacta-tatatactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatcaaagaagttccaaaaattatttgatctcacttaaattgactatttttagGTGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCACAGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTT
                                       aattgac  putative branch site (score: 3)
                                             ctattttt  CT-rich tract
                                    ttaaattgactatttt  TA-rich tract